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Ratings and Reviews 0 Ratings
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What is AutoDock?
AutoDock is a suite of automated docking tools designed to predict how small molecules, such as potential drugs or substrates, bind with receptors that possess a known three-dimensional structure. Over the years, this toolkit has seen numerous upgrades and improvements that have led to the creation of multiple docking engines. Presently, AutoDock features two main versions: AutoDock 4 and AutoDock Vina. A recent innovation, AutoDock-GPU, has been launched, significantly speeding up the docking processes of AutoDock 4 to rates that are several hundred times faster than the original single-CPU version. At its core, AutoDock 4 consists of two fundamental applications: autodock, which manages the docking of ligands to a grid representation of the target protein, and autogrid, which pre-calculates these grids. In addition to their primary role in docking, the atomic affinity grids produced can be visualized, offering essential insights that may aid organic synthetic chemists in designing more effective binders for their research endeavors. This visual capability not only enhances the understanding of binding interactions but also fosters a more seamless integration between computational models and tangible results in the realm of drug development.
What is Ascalaph Designer?
Ascalaph Designer is a multifunctional platform designed for executing molecular dynamic simulations. It combines various molecular dynamics approaches with classical and quantum mechanics techniques into a single graphical interface. Users can employ conjugate gradient methods to refine molecular geometries efficiently. The program presents molecular structures across separate windows, each featuring dual cameras that allow for simultaneous viewing from different perspectives and graphic formats. By manipulating the splitter found in the corners of each window, users can easily open additional subwindows. A simple click on an atom or bond with the left mouse button changes their color slightly, while a concise description of the selected element is displayed in the status bar. The wire-frame visualization proves particularly useful for visualizing larger molecules, like proteins, due to its speed and efficacy. Moreover, the CPK wire frame style integrates attributes from various earlier styles, thereby enriching the user experience. This adaptability positions Ascalaph Designer as an invaluable tool for researchers engaged in molecular dynamics studies, making it indispensable for those seeking to enhance their molecular analysis capabilities.
Integrations Supported
YouMi
API Availability
Has API
API Availability
Has API
Pricing Information
Pricing not provided.
Free Trial Offered?
Free Version
Pricing Information
Free
Free Trial Offered?
Free Version
Supported Platforms
SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux
Supported Platforms
SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux
Customer Service / Support
Standard Support
24 Hour Support
Web-Based Support
Customer Service / Support
Standard Support
24 Hour Support
Web-Based Support
Training Options
Documentation Hub
Webinars
Online Training
On-Site Training
Training Options
Documentation Hub
Webinars
Online Training
On-Site Training
Company Facts
Organization Name
AutoDock
Company Website
autodock.scripps.edu/
Company Facts
Organization Name
Agile Molecule
Company Location
Sweden
Company Website
www.biomolecular-modeling.com/Ascalaph/Ascalaph_Designer.html