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What is Bioconductor?

The Bioconductor initiative is committed to the development and distribution of open-source software aimed at facilitating precise and reproducible analysis of biological datasets. We foster an inclusive and collaborative atmosphere for both developers and data scientists. The platform is rich in resources intended to elevate the functionality of Bioconductor. Regardless of whether you require basic tools or advanced features, our comprehensive tutorials, guides, and documentation provide essential support. Leveraging the R programming language, Bioconductor adheres to an open-source and open development framework. With its biannual releases and an active user community, it serves as a crucial asset in the domain. Moreover, Bioconductor provides Docker images with each release and offers guidance on their deployment within AnVIL. Founded in 2001, Bioconductor has become a pivotal open-source software tool widely employed in bioinformatics and biomedical research. It boasts an impressive collection of over 2,000 R packages developed by more than 1,000 contributors, resulting in over 40 million downloads each year. Additionally, Bioconductor's influence is evident, having been cited in over 60,000 scientific publications, underscoring its profound impact on research and analysis within the biological sciences. This unwavering dedication to open-source collaboration not only supports current research but also propels future innovations in the field, making it an indispensable resource for ongoing scientific exploration.

What is BaseSpace Sequence Hub?

Effective data management and optimized bioinformatics solutions are crucial for labs embarking on or scaling their next-generation sequencing (NGS) efforts. At the heart of the BaseSpace Suite, BaseSpace Sequence Hub acts as a fluid extension of your Illumina equipment. By ensuring secure data transfer from the instrument to BaseSpace Sequence Hub, you can easily manage and analyze your data with a handpicked range of analytical applications. Utilizing Amazon Web Services (AWS) for its infrastructure, BaseSpace Sequence Hub emphasizes data security while enabling you to launch sequencing runs and monitor the performance quality of your devices. The platform increases operational efficiency by converting sequencing data into a uniform format and permitting direct cloud streaming. Moreover, it grants access to computational resources without the burden of heavy investments in local infrastructure. This solution enhances productivity within organizations by offering easy entry to numerous genomic analysis applications developed by Illumina or third-party providers, making it indispensable for any laboratory. Consequently, BaseSpace Sequence Hub not only streamlines laboratory workflows but also promotes innovative advancements and expansion within the field of genomic research. Ultimately, it empowers labs to focus on scientific discovery while minimizing the complexities associated with data management.

Media

Media

Integrations Supported

Amazon Web Services (AWS)
Docker
Illumina DRAGEN Secondary Analysis
Pluto
R
Scispot

Integrations Supported

Amazon Web Services (AWS)
Docker
Illumina DRAGEN Secondary Analysis
Pluto
R
Scispot

API Availability

Has API

API Availability

Has API

Pricing Information

Free
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

Bioconductor

Date Founded

2001

Company Location

United States

Company Website

www.bioconductor.org

Company Facts

Organization Name

Illumina

Company Location

United States

Company Website

www.illumina.com/products/by-type/informatics-products/basespace-sequence-hub.html

Categories and Features

Categories and Features

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