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What is Genome Analysis Toolkit (GATK)?

Developed by the Data Sciences Platform at the Broad Institute, this all-encompassing toolkit offers a broad spectrum of features that focus largely on variant discovery and genotyping. It boasts a powerful processing engine along with high-performance computing capabilities, making it suitable for handling projects of any size. The GATK is recognized as the gold standard for identifying SNPs and indels in germline DNA as well as RNA sequencing data. Its functionalities are expanding to include detection of somatic short variants, as well as tackling copy number variations (CNV) and structural variations (SV). In addition to the primary variant callers, the GATK features a variety of utilities designed for performing related tasks, such as processing and ensuring the quality of high-throughput sequencing data, and it is complemented by the renowned Picard toolkit. Initially tailored for exome and whole genome data produced by Illumina sequencing technologies, these tools exhibit enough flexibility to adapt to various other sequencing technologies and study designs. As the field of genomics continues to advance, the GATK's versatility guarantees its ongoing relevance in a wide range of genomic research projects, ensuring that it remains a pivotal resource for scientists exploring genetic variations.

What is Chemaxon?

By working in close partnership with our internal teams of chemists and biologists as well as our clients, we develop products that not only excel in performance but also offer profound scientific insights. Chemaxon boasts a versatile lineup that features ready-to-use solutions for researchers, backend resources tailored for IT professionals, supplementary components that enhance functionality, and smooth integrations enabling access to our technology through third-party platforms like Microsoft Excel and KNIME. With a user community surpassing one million, Chemaxon has positioned itself as a frontrunner in the creation of software that drives scientific innovation via sophisticated calculation, searching, and drawing functionalities. Our tools find extensive application in life sciences research and educational environments, catering to a wide array of industries, including many leading pharmaceutical firms. We proudly operate on a global scale with offices located in Budapest, Basel, Boston, and San Diego, all supported by a robust network of distributors around the globe. Our unwavering dedication to scientific excellence guarantees that we consistently lead in technological innovations within the life sciences field, paving the way for future advancements and discoveries. This commitment is reflected in the strong relationships we build with our clients, ensuring that we meet their evolving needs effectively.

Media

Media

Integrations Supported

Docker
Laby

Integrations Supported

Docker
Laby

API Availability

Has API

API Availability

Has API

Pricing Information

Free
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

Broad Institute

Company Location

United States

Company Website

gatk.broadinstitute.org/hc/

Company Facts

Organization Name

Chemaxon

Date Founded

1998

Company Location

Hungary

Company Website

chemaxon.com/product-landing

Categories and Features

Categories and Features

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