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What is Genome Analysis Toolkit (GATK)?

Developed by the Data Sciences Platform at the Broad Institute, this all-encompassing toolkit offers a broad spectrum of features that focus largely on variant discovery and genotyping. It boasts a powerful processing engine along with high-performance computing capabilities, making it suitable for handling projects of any size. The GATK is recognized as the gold standard for identifying SNPs and indels in germline DNA as well as RNA sequencing data. Its functionalities are expanding to include detection of somatic short variants, as well as tackling copy number variations (CNV) and structural variations (SV). In addition to the primary variant callers, the GATK features a variety of utilities designed for performing related tasks, such as processing and ensuring the quality of high-throughput sequencing data, and it is complemented by the renowned Picard toolkit. Initially tailored for exome and whole genome data produced by Illumina sequencing technologies, these tools exhibit enough flexibility to adapt to various other sequencing technologies and study designs. As the field of genomics continues to advance, the GATK's versatility guarantees its ongoing relevance in a wide range of genomic research projects, ensuring that it remains a pivotal resource for scientists exploring genetic variations.

What is GPUEater?

Persistence container technology streamlines operations through a lightweight framework, enabling users to be billed by the second rather than enduring long waits of hours or months. The billing process, which will be conducted through credit card transactions, is scheduled for the subsequent month. This innovative technology provides exceptional performance at a cost-effective rate compared to other available solutions. Moreover, it is poised for implementation in the world's fastest supercomputer at Oak Ridge National Laboratory. A variety of machine learning applications, such as deep learning, computational fluid dynamics, video encoding, and 3D graphics, will gain from this technology, alongside other GPU-dependent tasks within server setups. The adaptable nature of these applications showcases the extensive influence of persistence container technology across diverse scientific and computational domains. In addition, its deployment is likely to foster new research opportunities and advancements in various fields.

Media

Media

Integrations Supported

Docker
Keras
PyTorch
TensorFlow

Integrations Supported

Docker
Keras
PyTorch
TensorFlow

API Availability

Has API

API Availability

Has API

Pricing Information

Free
Free Trial Offered?
Free Version

Pricing Information

$0.0992 per hour
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

Broad Institute

Company Location

United States

Company Website

gatk.broadinstitute.org/hc/

Company Facts

Organization Name

GPUEater

Company Location

United States

Company Website

gpueater.com

Categories and Features

Categories and Features

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