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What is GenomeBrowse?

This free software offers exceptional visual displays of your genomic data, enabling you to investigate the specific functions at each base pair within your samples. Operating as a native application on your computer, GenomeBrowse ensures that you do not have to sacrifice speed or quality, providing a uniform experience across various platforms. With performance being a key focus, it delivers a faster and more fluid browsing experience than any other genome browser available. Moreover, GenomeBrowse is fully integrated into the sophisticated Golden Helix VarSeq platform, which is designed for variant annotation and interpretation. If you find the visualization features of GenomeBrowse appealing, you might want to check out VarSeq for additional capabilities such as data filtering, annotation, and analysis before utilizing the same interface for visual representation. The software effectively displays all your alignment data and allows you to view multiple samples at once, which can be incredibly helpful in pinpointing contextually relevant discoveries. This capability makes it an essential resource for researchers aiming to extract more profound insights from their genomic analyses, ultimately enhancing the overall research process. By leveraging these features, users can maximize the impact and utility of their genomic studies.

What is Genome Analysis Toolkit (GATK)?

Developed by the Data Sciences Platform at the Broad Institute, this all-encompassing toolkit offers a broad spectrum of features that focus largely on variant discovery and genotyping. It boasts a powerful processing engine along with high-performance computing capabilities, making it suitable for handling projects of any size. The GATK is recognized as the gold standard for identifying SNPs and indels in germline DNA as well as RNA sequencing data. Its functionalities are expanding to include detection of somatic short variants, as well as tackling copy number variations (CNV) and structural variations (SV). In addition to the primary variant callers, the GATK features a variety of utilities designed for performing related tasks, such as processing and ensuring the quality of high-throughput sequencing data, and it is complemented by the renowned Picard toolkit. Initially tailored for exome and whole genome data produced by Illumina sequencing technologies, these tools exhibit enough flexibility to adapt to various other sequencing technologies and study designs. As the field of genomics continues to advance, the GATK's versatility guarantees its ongoing relevance in a wide range of genomic research projects, ensuring that it remains a pivotal resource for scientists exploring genetic variations.

Media

Media

Integrations Supported

Docker
VSClinical
VarSeq

Integrations Supported

Docker
VSClinical
VarSeq

API Availability

Has API

API Availability

Has API

Pricing Information

Free
Free Trial Offered?
Free Version

Pricing Information

Free
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

Golden Helix

Date Founded

1998

Company Location

United States

Company Website

www.goldenhelix.com/products/GenomeBrowse/

Company Facts

Organization Name

Broad Institute

Company Location

United States

Company Website

gatk.broadinstitute.org/hc/

Categories and Features

Categories and Features

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