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What is OmicsBox?

OmicsBox stands out as a premier bioinformatics platform that delivers comprehensive data analysis capabilities for genomes, transcriptomes, and metagenomes, in addition to facilitating genetic variation research. This software, widely adopted by prominent research institutions globally, enables scientists to handle extensive and complex datasets while optimizing their analytical workflows. Its design emphasizes efficiency and user-friendliness, providing robust tools that help extract meaningful biological insights from omics data. The application is segmented into various modules, each tailored with distinct tools and functionalities aimed at conducting specific analyses, including de novo genome assembly, genetic variation assessments, differential expression evaluations, and taxonomic classifications of microbiomes, along with insightful result interpretations and engaging visualizations. Notably, the functional analysis module incorporates the well-regarded Blast2GO annotation method, making OmicsBox an excellent resource for research involving non-model organisms, thereby broadening its applicability in the scientific community. This versatility positions OmicsBox as an essential tool for researchers looking to advance their understanding of complex biological systems.

What is Genome Analysis Toolkit (GATK)?

Developed by the Data Sciences Platform at the Broad Institute, this all-encompassing toolkit offers a broad spectrum of features that focus largely on variant discovery and genotyping. It boasts a powerful processing engine along with high-performance computing capabilities, making it suitable for handling projects of any size. The GATK is recognized as the gold standard for identifying SNPs and indels in germline DNA as well as RNA sequencing data. Its functionalities are expanding to include detection of somatic short variants, as well as tackling copy number variations (CNV) and structural variations (SV). In addition to the primary variant callers, the GATK features a variety of utilities designed for performing related tasks, such as processing and ensuring the quality of high-throughput sequencing data, and it is complemented by the renowned Picard toolkit. Initially tailored for exome and whole genome data produced by Illumina sequencing technologies, these tools exhibit enough flexibility to adapt to various other sequencing technologies and study designs. As the field of genomics continues to advance, the GATK's versatility guarantees its ongoing relevance in a wide range of genomic research projects, ensuring that it remains a pivotal resource for scientists exploring genetic variations.

Media

Media

Integrations Supported

Docker

Integrations Supported

Docker

API Availability

Has API

API Availability

Has API

Pricing Information

€100/month/seat
Free Trial Offered?
Free Version

Pricing Information

Free
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

BioBam Bioinformatics S.L.

Date Founded

2011

Company Location

Spain

Company Website

www.biobam.com

Company Facts

Organization Name

Broad Institute

Company Location

United States

Company Website

gatk.broadinstitute.org/hc/

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