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Chemaxon Design Hub

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What is PyMOL?

PyMOL is a molecular visualization software that operates as a user-supported open-source project, with its management and distribution handled by Schrödinger. The transition to the PyQt interface has replaced Tcl/Tk and MacPyMOL across all systems, which has greatly improved the overall user experience. This platform provides enhanced compatibility for third-party plugins and custom scripting, establishing it as a robust tool for visualizing and animating three-dimensional molecular structures. Additionally, a plug-in enables users to seamlessly integrate 3D images and animations into PowerPoint presentations, facilitating better communication of scientific concepts. While PyMOL is commercially licensed, a significant portion of its source code is available for free under a permissive license, supporting its open-source nature. This initiative is primarily funded by the sales of PyMOL licenses, with Schrödinger playing a key role in its sustainability. Users enjoy the advantages of open access to executables and a flexible evaluation system, allowing them to explore the software's capabilities thoroughly. Recent updates have introduced an improved fuse command that eliminates hypervalent bonds, substituting them with monovalent atoms, and a new properties inspector that allows settings to be unset using the “delete” key for greater user control. Moreover, the resolution issues that previously caused the workspace to disappear have been addressed, enhancing the overall user experience significantly. As a result, users can now work more effectively, enjoying a more polished and reliable interface.

What is Chemaxon Design Hub?

A new integrated platform has emerged, effectively connecting scientific reasoning, compound development, and computational tools. Chemaxon's Design Hub enhances the field of medicinal chemistry by enabling users to analyze and prioritize groundbreaking concepts. This cohesive platform streamlines the design of compounds and the management of ideas. By shifting from conventional PowerPoint presentations to interactive, visually appealing, and chemically searchable concepts, the compound design process is significantly improved. Users can easily access established physicochemical properties, computational models, novelty assessments, or available compound libraries in an intuitive visual environment. This resource also fosters collaboration with Contract Research Organizations (CROs) throughout the compound development process, providing a secure online workspace. Moreover, users can evaluate data obtained from biological assays or structural experiments to determine Structure-Activity Relationships (SAR) and formulate new hypotheses for future optimization. A “designer's electronic lab notebook” is available for organizing scientific ideas, featuring drawing tools that are attentive to chemical properties, thereby enhancing the design workflow. This all-encompassing strategy guarantees that each phase of compound development is not only effective but also thoroughly documented, thus facilitating the path toward future advancements. Additionally, the platform's user-friendly interface encourages innovative thinking and collaboration among researchers, ultimately driving the discovery of novel therapeutic compounds.