What is Cufflinks?
Cufflinks is a software solution designed to compile transcript data, estimate their relative abundance, and analyze differential expression and regulation within RNA-Seq datasets. By processing aligned RNA-Seq reads, it organizes these into a coherent representation of transcripts. The software evaluates the relative levels of these transcripts using the number of supporting reads while considering biases introduced during library preparation. Originally developed in partnership with the Laboratory for Mathematical and Computational Biology, Cufflinks seeks to streamline the installation process by providing various binary packages that mitigate the often challenging task of building the software from its source code, which typically requires the installation of multiple libraries. This toolset includes several utilities aimed at RNA-Seq experiment analysis, with some features available for standalone use and others designed to integrate into a broader analytical workflow. Furthermore, Cufflinks is essential for genomics researchers, as it significantly enhances their capacity to interpret RNA-Seq data and derive meaningful insights from their experiments. With its user-friendly approach, Cufflinks continues to support advancements in genomic research methodologies.
Pricing
Price Starts At:
Free
Free Version:
Free Version available.
Integrations
No integrations listed.
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Company Facts
Company Name:
Cole Trapnell
Date Founded:
2017
Company Location:
United States
Company Website:
cole-trapnell-lab.github.io/cufflinks/
Product Details
Deployment
Windows
Mac
Linux
Training Options
Documentation Hub
Support
Web-Based Support
Product Details
Target Company Sizes
Individual
1-10
11-50
51-200
201-500
501-1000
1001-5000
5001-10000
10001+
Target Organization Types
Mid Size Business
Small Business
Enterprise
Freelance
Nonprofit
Government
Startup
Supported Languages
English