List of the Top 10 Payment Processing Software for FreshBooks in 2025

BILL is a leading provider of cloud-based software that simplifies, digitizes, and automates back-office financial processes for small and mid-sized businesses. Our customers come from all industries, ranging from startups to established brands and nonprofits to franchises.

The latest benchmark in digital payments is set by Stripe, which stands out as the premier platform for conducting online business. Across the globe, progressive enterprises rely on us to manage billions in transactions each year. Stripe develops highly adaptable and robust tools tailored for online commerce. Whether launching a subscription model, an on-demand marketplace, an e-commerce website, or a crowdfunding initiative, our well-crafted APIs and exceptional features empower you to deliver an outstanding experience for your customers. By enabling countless tech-driven companies to grow at unprecedented speeds and efficiency, Stripe is at the forefront of innovation. We view payment systems as a coding challenge rather than a financial issue, focusing on creating elegant, modular solutions that facilitate strong, scalable, and flexible integrations. Our user-friendly approach simplifies complex processes by eliminating unnecessary obstacles and distractions, ensuring that businesses can focus on their core mission without getting bogged down in technical difficulties. In a constantly evolving digital landscape, Stripe continues to adapt and enhance its offerings to meet the diverse needs of its users.

Melio serves as a streamlined accounts payable solution aimed at enhancing bill payment processes, optimizing operational workflows, and boosting cash flow management. The platform enables users to make payments to vendors via online bank transfers or credit and debit cards, even when those vendors only accept check payments, while Melio handles all the tedious manual tasks. It integrates effortlessly with accounting software such as QuickBooks and Xero, ensuring that your financial records remain current. With Melio, payments can be made using either bank transfers or card options, which not only helps in managing cash flow but also allows users to earn rewards. You can easily input vendor information or bill details manually, upload documents, or take a photo of the invoice for quick processing—it’s incredibly user-friendly. Payments can be scheduled in alignment with your cash flow strategy, and Melio will oversee the execution of those payments. Furthermore, the platform facilitates payments to international vendors in their native currencies, ensuring smooth transactions for various services and products. This comprehensive approach makes managing accounts payable more efficient and less stressful than ever before.

Over 9 million merchants rely on PayPal to help them launch, manage, and grow their enterprises. We provide a comprehensive suite of tools, products, financing solutions, and personalized support that enables you to efficiently handle critical functions such as payment processing, website creation, shipping logistics, and marketing strategies. Furthermore, our business loans* allow you to secure the funding necessary for both new ventures and sustained growth. You can accept payments seamlessly, whether online through invoicing and tailored website checkouts or in-person using mobile card readers for on-the-go transactions. Our diverse range of products and services is designed to enhance your daily operations, featuring capabilities for payment tracking and shipping label printing. Additionally, explore our merchant lending options that ensure swift access to vital funds for your business while offering payment plans to your customers, allowing them to pay in installments while you receive your payment upfront. Ultimately, our mission is to bolster your business throughout its journey, enabling you to concentrate on what truly matters: driving growth and enhancing customer satisfaction, so you can achieve your aspirations.

HoneyBook simplifies the process for solo entrepreneurs to interact with their clients, oversee projects, and receive payments seamlessly within a single platform. By utilizing our business management software, you can streamline your administrative tasks and keep track of your responsibilities, ultimately conserving both time and financial resources to foster your business growth. It functions much like a personal assistant dedicated to your needs. Equipped with features such as proposals, invoices, contracts, payment processing, and scheduling, HoneyBook provides all the essential tools required to ensure your clients have a remarkable experience. In doing so, it empowers you to focus on what truly matters—building lasting relationships with your customers.

Boost your expansion by harnessing the potential of your payment solutions. With seamless integration, setting up payments is as straightforward as 1-2-3. A simple one-click process lets you link various accounting software to your current payment gateway, ensuring that payouts are reconciled automatically in real-time in under five minutes, thereby saving you countless hours of effort each day. Chargezoom's payment integration system is compatible with over 20 different payment gateways, requiring no alterations, having no transaction fees, and allowing you to effortlessly point, click, and integrate! In addition to this, you will benefit from a Two-Way Sync Payment Dashboard, eInvoicing and the option to pay via email, compliant surcharging options, subscription management capabilities, a tokenized customer vault, and a developer-friendly API. Creating your payment infrastructure has never been simpler or more efficient! With these tools at your disposal, you can focus on scaling your business while we take care of the payment process.

HitPay POS offers an all-encompassing solution for efficiently managing your business operations. It allows you to synchronize your products across both online and offline sales channels, manage an unlimited number of locations, and automate numerous operational tasks seamlessly. The pricing structure is clear and simple, operating on a pay-per-transaction basis without any hidden fees for setup or subscriptions. You can quickly get started, with your initial sale being just a few clicks away using HitPay's online store. The platform simplifies the process of launching an online business by providing an intuitive setup experience, appealing design choices, and advanced features designed to promote growth. Additionally, HitPay’s recurring billing system makes it easy to manage subscription plans and memberships, enabling you to set up billing cycles and automate payment collections, ensuring prompt receipt of funds. Entrepreneurs will find HitPay's premium billing and subscription management functionalities accessible at no additional charge, making it an essential resource for optimizing their business processes. Moreover, the platform offers continuous support to assist you in overcoming any obstacles as your business continues to grow and evolve. This commitment to customer care further enhances the value of HitPay for those looking to thrive in a competitive market.

Don't let sales opportunities slip away! By adopting flexible payment options, you can easily handle installment payments for your offerings. This empowers your customers to choose payment plans that fit their financial needs. Check out our growing list of online retailers that utilize Partial.ly for payment plans; you're sure to find something that catches your eye. New merchants are added frequently, so make it a point to check back often. For businesses managing large invoices, Partial.ly allows you to set up customized, flexible payment options, enabling clients to start payments right away. You can seamlessly integrate it with your existing invoicing software for bulk payment solutions or use Partial.ly as a standalone payment processor. If you're in eCommerce, simply link your shopping cart to the intuitive Partial.ly checkout system. By giving your customers the freedom to select their preferred payment terms, you can significantly enhance your sales and conversion rates. Additionally, these convenient installment options may attract new customers who value financial flexibility, leading to increased business growth over time.

MerchantPlus offers three main account packages tailored to fit the needs of businesses of all sizes, from emerging startups to established large enterprises. With over ten years of experience in the electronic payment industry, MerchantPlus provides customized solutions that meet the unique demands of various sectors and technical specifications. Below is a concise overview of our services; however, we invite you to contact a payment consultant for a more in-depth conversation about your particular requirements. Based in New York City, the MerchantPlus support team is dedicated to guiding you through every step, from the initial onboarding process to technology integrations and operational setup. Furthermore, MerchantPlus provides solutions that tackle the complexities encountered by global eCommerce, SaaS, and service-based businesses, featuring tools such as foreign currency conversion, native settlement options, multi-region merchant account balancing, and a variety of alternative payment methods. This extensive suite of offerings not only equips your business to navigate the challenges of the digital marketplace but also positions it for sustained success and growth in an ever-evolving environment.

At AllayPay, we prioritize the needs of high-risk and high-volume merchants, while also dedicating ourselves to supporting a wide range of low-risk and card-present businesses spanning various industries such as hospitality, dining, retail, and professional services like law and consulting. Our mission is to empower clients by offering them the ability to choose payment solutions that align with their specific requirements. With our sophisticated processing platforms, we facilitate transactions through any preferred payment method, guaranteeing convenience for every user. Understanding the complexities of the high-risk payment environment can indeed be overwhelming, especially when confronted with challenges like reputation management, credit issues, or stringent regulations that can hinder the approval process for merchant accounts. Thus, it is crucial to team up with a payment processor that not only understands the distinct challenges your sector encounters but also provides customized solutions to effectively manage those risks. By collaborating with us, you benefit from our extensive expertise, which simplifies your payment operations, allowing you to concentrate on expanding your business. Furthermore, our commitment to innovation ensures that we continuously enhance our services to meet the evolving needs of our clients.