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What is Genome Analysis Toolkit (GATK)?

Developed by the Data Sciences Platform at the Broad Institute, this all-encompassing toolkit offers a broad spectrum of features that focus largely on variant discovery and genotyping. It boasts a powerful processing engine along with high-performance computing capabilities, making it suitable for handling projects of any size. The GATK is recognized as the gold standard for identifying SNPs and indels in germline DNA as well as RNA sequencing data. Its functionalities are expanding to include detection of somatic short variants, as well as tackling copy number variations (CNV) and structural variations (SV). In addition to the primary variant callers, the GATK features a variety of utilities designed for performing related tasks, such as processing and ensuring the quality of high-throughput sequencing data, and it is complemented by the renowned Picard toolkit. Initially tailored for exome and whole genome data produced by Illumina sequencing technologies, these tools exhibit enough flexibility to adapt to various other sequencing technologies and study designs. As the field of genomics continues to advance, the GATK's versatility guarantees its ongoing relevance in a wide range of genomic research projects, ensuring that it remains a pivotal resource for scientists exploring genetic variations.

What is BaseSpace Sequence Hub?

Effective data management and optimized bioinformatics solutions are crucial for labs embarking on or scaling their next-generation sequencing (NGS) efforts. At the heart of the BaseSpace Suite, BaseSpace Sequence Hub acts as a fluid extension of your Illumina equipment. By ensuring secure data transfer from the instrument to BaseSpace Sequence Hub, you can easily manage and analyze your data with a handpicked range of analytical applications. Utilizing Amazon Web Services (AWS) for its infrastructure, BaseSpace Sequence Hub emphasizes data security while enabling you to launch sequencing runs and monitor the performance quality of your devices. The platform increases operational efficiency by converting sequencing data into a uniform format and permitting direct cloud streaming. Moreover, it grants access to computational resources without the burden of heavy investments in local infrastructure. This solution enhances productivity within organizations by offering easy entry to numerous genomic analysis applications developed by Illumina or third-party providers, making it indispensable for any laboratory. Consequently, BaseSpace Sequence Hub not only streamlines laboratory workflows but also promotes innovative advancements and expansion within the field of genomic research. Ultimately, it empowers labs to focus on scientific discovery while minimizing the complexities associated with data management.

Media

Media

Integrations Supported

Amazon Web Services (AWS)
Docker
Illumina DRAGEN Secondary Analysis
Pluto
Scispot

Integrations Supported

Amazon Web Services (AWS)
Docker
Illumina DRAGEN Secondary Analysis
Pluto
Scispot

API Availability

Has API

API Availability

Has API

Pricing Information

Free
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

Broad Institute

Company Location

United States

Company Website

gatk.broadinstitute.org/hc/

Company Facts

Organization Name

Illumina

Company Location

United States

Company Website

www.illumina.com/products/by-type/informatics-products/basespace-sequence-hub.html

Categories and Features

Categories and Features

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