Ratings and Reviews 0 Ratings

Total
ease
features
design
support

This software has no reviews. Be the first to write a review.

Write a Review

Ratings and Reviews 0 Ratings

Total
ease
features
design
support

This software has no reviews. Be the first to write a review.

Write a Review

Alternatives to Consider

  • 800.com Reviews & Ratings
    1,455 Ratings
    Company Website
  • Samsara Reviews & Ratings
    1,995 Ratings
    Company Website
  • BrandMap® 10 Reviews & Ratings
    Company Website
  • Jama Connect Reviews & Ratings
    321 Ratings
    Company Website
  • Ninox Reviews & Ratings
    541 Ratings
    Company Website
  • CallTrackingMetrics Reviews & Ratings
    844 Ratings
    Company Website
  • Fishbowl Reviews & Ratings
    1,041 Ratings
    Company Website
  • Highcharts Reviews & Ratings
    111 Ratings
    Company Website
  • Ant Media Server Reviews & Ratings
    201 Ratings
    Company Website
  • JS7 JobScheduler Reviews & Ratings
    Company Website

What is Loupe Browser?

Loupe Browser distinguishes itself as an effective visualization platform, equipped with intuitive features that are crucial for exploring and analyzing datasets from 10x Genomics Chromium and Visium. Furthermore, the LoupeR package streamlines the process of converting Seurat objects into formats that are compatible with Loupe Browser. The interactive capabilities of Loupe Browser are well-demonstrated through its application to a lung squamous cell carcinoma dataset. A key aspect of the user interface is the view panel, which displays individual points, each corresponding to a cell barcode, across various projections. Typically, each point represents the barcode of a single cell, facilitating detailed analysis. The default projection is a t-SNE plot generated by the cell ranger pipeline, but users also have access to other visualization options. They can easily drag the mouse over the cells to reposition the plot and utilize the mouse wheel or trackpad for zooming in or out. Additionally, when the mouse hovers over the plot, cluster labels appear, which is especially advantageous for analyzing datasets with many precomputed clusters. This feature significantly enriches the analytical process, allowing for easier identification and interpretation of intricate data patterns. With its user-centric design and functionality, Loupe Browser empowers researchers to gain deeper insights from their genomic data.

What is Correlation Engine?

The Correlation Engine is an interactive omics knowledgebase that integrates private omics information within a comprehensive biological context, enriched by carefully selected public datasets. Established as one of the largest biological databases around, it provides life science researchers with exceptional access to a vast array of high-quality whole-genome analyses, accompanied by advanced scientific tools. This platform promotes innovative discoveries by allowing users to delve into billions of data points gathered from standardized whole genome study evaluations. It includes a variety of applications designed to discern biological relevance, a perpetually growing repository of curated datasets, and adaptability across different species and multi-omic contexts. Researchers benefit from an easy-to-use graphical user interface that supports guided workflows, one-click applications, and application programming interfaces (APIs). By facilitating the conversion of omic data into actionable insights, the platform empowers users to explore over 25,000 multi-omics studies stemming from more than 250,000 unique signatures that have been reanalyzed, significantly bolstering their research endeavors. This extensive resource not only enhances the research process but also encourages collaboration among scientists striving for breakthroughs in the life sciences.

Media

Media

Integrations Supported

Illumina DRAGEN Secondary Analysis

Integrations Supported

Illumina DRAGEN Secondary Analysis

API Availability

Has API

API Availability

Has API

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

10x Genomics

Date Founded

2012

Company Location

United States

Company Website

www.10xgenomics.com/support/software/loupe-browser/latest

Company Facts

Organization Name

Illumina

Company Location

United States

Company Website

www.illumina.com/products/by-type/informatics-products/basespace-correlation-engine.html

Categories and Features

Categories and Features

Popular Alternatives

GenomeStudio Reviews & Ratings

GenomeStudio

Illumina

Popular Alternatives

OmicsBox Reviews & Ratings

OmicsBox

BioBam Bioinformatics S.L.
Parse Biosciences Evercode Reviews & Ratings

Parse Biosciences Evercode

Parse Biosciences