What is Loupe Browser?
Loupe Browser distinguishes itself as an effective visualization platform, equipped with intuitive features that are crucial for exploring and analyzing datasets from 10x Genomics Chromium and Visium. Furthermore, the LoupeR package streamlines the process of converting Seurat objects into formats that are compatible with Loupe Browser. The interactive capabilities of Loupe Browser are well-demonstrated through its application to a lung squamous cell carcinoma dataset. A key aspect of the user interface is the view panel, which displays individual points, each corresponding to a cell barcode, across various projections. Typically, each point represents the barcode of a single cell, facilitating detailed analysis. The default projection is a t-SNE plot generated by the cell ranger pipeline, but users also have access to other visualization options. They can easily drag the mouse over the cells to reposition the plot and utilize the mouse wheel or trackpad for zooming in or out. Additionally, when the mouse hovers over the plot, cluster labels appear, which is especially advantageous for analyzing datasets with many precomputed clusters. This feature significantly enriches the analytical process, allowing for easier identification and interpretation of intricate data patterns. With its user-centric design and functionality, Loupe Browser empowers researchers to gain deeper insights from their genomic data.
Integrations
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Company Facts
Company Name:
10x Genomics
Date Founded:
2012
Company Location:
United States
Company Website:
www.10xgenomics.com/support/software/loupe-browser/latest
Product Details
Deployment
Windows
Mac
Linux
Training Options
Documentation Hub
On-Site Training
Video Library
Support
Standard Support
Web-Based Support
Product Details
Target Company Sizes
Individual
1-10
11-50
51-200
201-500
501-1000
1001-5000
5001-10000
10001+
Target Organization Types
Mid Size Business
Small Business
Enterprise
Freelance
Nonprofit
Government
Startup
Supported Languages
English