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What is SOPHiA GENETICS?

Our global network for data sharing generates valuable clinical insights from a variety of data sources, all focused on improving patient outcomes around the world. SOPHiA GENETICS is committed to transforming the landscape of AI-driven medicine. By harmonizing multiple healthcare-omics data types, we are breaking down existing data silos and developing machine learning models that provide insights to assist healthcare professionals in improving patient care. The newly updated interface, accompanied by innovative features and enhanced functionalities, will streamline precision medicine workflows, driving us closer to the goal of making data-informed healthcare available to everyone. Harnessing the strengths of AI and machine learning (ML), our cloud-based platform offers a secure and user-friendly environment for the standardization, computation, and analysis of digital health data, ultimately generating insights from complex multimodal data sets that can significantly enhance diagnostic procedures, treatment options, analytical techniques, and drug development projects. Furthermore, our ongoing advancements underscore our unwavering dedication to fostering innovation within the healthcare industry, ensuring that we remain at the forefront of technological progress. In this evolving landscape, our mission is to empower healthcare providers with the tools necessary to deliver exceptional care to their patients.

What is Loupe Browser?

Loupe Browser distinguishes itself as an effective visualization platform, equipped with intuitive features that are crucial for exploring and analyzing datasets from 10x Genomics Chromium and Visium. Furthermore, the LoupeR package streamlines the process of converting Seurat objects into formats that are compatible with Loupe Browser. The interactive capabilities of Loupe Browser are well-demonstrated through its application to a lung squamous cell carcinoma dataset. A key aspect of the user interface is the view panel, which displays individual points, each corresponding to a cell barcode, across various projections. Typically, each point represents the barcode of a single cell, facilitating detailed analysis. The default projection is a t-SNE plot generated by the cell ranger pipeline, but users also have access to other visualization options. They can easily drag the mouse over the cells to reposition the plot and utilize the mouse wheel or trackpad for zooming in or out. Additionally, when the mouse hovers over the plot, cluster labels appear, which is especially advantageous for analyzing datasets with many precomputed clusters. This feature significantly enriches the analytical process, allowing for easier identification and interpretation of intricate data patterns. With its user-centric design and functionality, Loupe Browser empowers researchers to gain deeper insights from their genomic data.

Media

Media

Integrations Supported

Additional information not provided

Integrations Supported

Additional information not provided

API Availability

Has API

API Availability

Has API

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

SOPHiA GENETICS

Date Founded

2011

Company Location

Switzerland

Company Website

www.sophiagenetics.com

Company Facts

Organization Name

10x Genomics

Date Founded

2012

Company Location

United States

Company Website

www.10xgenomics.com/support/software/loupe-browser/latest

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