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What is h5py?

The h5py library provides an easy-to-use interface for managing HDF5 binary data formats within Python. It enables users to efficiently manage large volumes of numerical data while seamlessly integrating with NumPy. For instance, you can interact with and modify extensive datasets, potentially spanning terabytes, as though they were ordinary NumPy arrays. This library allows for the organization of numerous datasets within a single file, giving users the flexibility to implement their own categorization and tagging systems. H5py incorporates familiar concepts from NumPy and Python, including the use of dictionary and array syntax. It permits you to traverse datasets in a file and inspect their .shape and .dtype attributes. Starting with h5py is straightforward, requiring no previous experience with HDF5, which makes it user-friendly for those who are new to the field. In addition to its easy-to-navigate high-level interface, h5py is constructed on a Cython wrapper for the HDF5 C API, which ensures that virtually any operation achievable in C with HDF5 can be replicated using h5py. This blend of user-friendliness and robust functionality has solidified its popularity among scientists and researchers working with data. Furthermore, the active community around h5py contributes to its continuous improvement and support, making it even easier for users to troubleshoot and enhance their projects.

What is CZ CELLxGENE Discover?

Select two customized cell groups by leveraging metadata to identify their most distinctly expressed genes. Use the vast repository of millions of cells from the integrated CZ CELLxGENE database for comprehensive analysis. Engage in dynamic examinations of datasets to explore how gene expression patterns are shaped by spatial, environmental, and genetic factors through an intuitive no-code interface. This approach allows researchers to gain insights into existing datasets or utilize them as a springboard to uncover novel cell subtypes and states. Census enables access to any tailored segment of standardized cell data within the CZ CELLxGENE, with options for exploration in both R and Python environments. Immerse yourself in an interactive encyclopedia that features over 700 cell types, complete with detailed definitions, marker genes, lineage details, and related datasets all accessible in a single platform. In addition, researchers can browse and acquire an extensive array of standardized data collections, alongside more than 1,000 datasets that illuminate the functions of both healthy mouse and human tissues, significantly enhancing the study of cellular biology. This resource serves as an invaluable tool for scientists striving to deepen their understanding of cellular dynamics and gene expression, ultimately driving innovation in the field. Furthermore, the user-friendly interface promotes collaborative efforts among researchers, fostering a community of shared knowledge and discoveries.

Media

Media

Integrations Supported

Python
BrainWave 6
NumPy
R
Visual Studio
Xcode

Integrations Supported

Python
BrainWave 6
NumPy
R
Visual Studio
Xcode

API Availability

Has API

API Availability

Has API

Pricing Information

Free
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

HDF5

Company Website

www.h5py.org

Company Facts

Organization Name

CZ CELLxGENE

Company Location

United States

Company Website

cellxgene.cziscience.com

Categories and Features

Categories and Features

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