List of the Top 25 Warehouse Management Software for Shopify in 2025

Fishbowl stands out as the top-selling software designed for managing warehouses and manufacturing processes. This software provides small and medium enterprises, including manufacturers, distributors, and service providers, with the capability to seamlessly incorporate sophisticated inventory functionalities into QuickBooks. Its features include tracking across multiple locations, managing bill of materials, facilitating billing and shipping, setting auto reorder points, and integrating with EDI shopping carts, merchant services, and various other business solutions. If you seek a cost-effective option for inventory management, Fishbowl is an outstanding choice. By utilizing its advanced technology, your business can enhance operational efficiency and achieve significant cost savings. Moreover, the user-friendly interface ensures that even those with limited tech experience can navigate and leverage its capabilities effectively.

ShipHero simplifies the shipping process for eCommerce businesses through our robust Warehouse Management Software. Designed for emerging and scaling brands as well as high-volume 3PLs, our cloud-based WMS equips you with the essential tools and processes to operate an efficient warehouse. By leveraging our technology, you can significantly enhance your eCommerce operations and achieve greater success. We excel in supporting eCommerce brands and 3PLs by delivering exceptional results: - Cut down on mis-picks and mis-ships by over 99% - Lower warehouse expenses by as much as 35% - Boost picking efficiency by threefold - Enjoy shipping times that are 30% faster - We proudly cater to over 10% of Shopify Plus stores around the world, demonstrating our widespread impact in the industry.

Flowspace features an integrated warehouse management system (WMS) specifically designed for direct-to-consumer (DTC) and business-to-business (B2B) brands. This system optimizes warehouse operations to efficiently fulfill orders across various sales channels. It enables the standardization of procedures at different fulfillment sites, automates the order processing to minimize inaccuracies, and provides real-time insights into operational efficiency. Additionally, Flowspace's WMS accommodates value-added services such as kitting and personalized packaging, allowing brands to offer customized experiences at scale.

Kechie is a comprehensive Enterprise Resource Planning (ERP) software available as Software as a Service (SaaS), designed to enhance user experience while leveraging cutting-edge cloud technology. This platform can be easily tailored to accommodate the evolving requirements of your organization. Its powerful engine allows for real-time monitoring and tracking of transactions across various domains including CRM, Sales, Inventory Management, WMS, Logistics, Procurement, Manufacturing, and Finance. By streamlining your operations, Kechie can significantly boost your profitability. Its user-friendly interface ensures accessibility without a hefty price tag. You have the option to purchase it in modular packages, such as inventory management, warehouse management, manufacturing, finance, or choose the complete ERP system that encompasses all these functionalities. Let us demonstrate how you can run your business with greater efficiency and effectiveness, ultimately setting the stage for sustainable growth.

SuiteMaster – Cloud ERP & CRM Designed to Evolve With Your Business SuiteMaster is an all-in-one ERP and CRM platform that helps small and mid-sized businesses manage sales, operations, finance, and customer relationships in one integrated system. Built with a modular architecture, it allows you to choose from hundreds of pre-built business applications—including CRM, Accounting, Marketing Automation, HR, Inventory, Manufacturing, Project Management, E-Commerce, and more—so you only use (and pay for) the tools you need. Its unified approach eliminates the complexity of managing multiple disconnected systems. Data flows effortlessly across departments, enabling teams to work with real-time information, automate key processes, and improve productivity. Customization is simple, letting you tailor workflows, reports, and interfaces to your exact requirements. SuiteMaster also supports a complete white-label program, giving consultants, agencies, and technology partners the ability to deliver a fully branded ERP solution alongside their own services. Whether you operate in manufacturing, distribution, retail, services, non-profit, or other industries, SuiteMaster provides the flexibility, scalability, and affordability needed to adapt quickly and grow confidently.

Enhance your inventory oversight, maximize warehouse capacity, and streamline your pick-pack-ship operations with Jesta’s Warehouse Management System (WMS). Featuring real-time inventory tracking, Jesta’s WMS facilitates smooth inbound and outbound processes while accommodating various product formats, such as hanging, flat, and bulk items. The direct putaway functionality enables staff to swiftly and effectively store incoming stock, synchronizing data seamlessly with your ERP system. When it comes to fulfilling outbound orders, the system guides employees to the optimal picking locations, ensuring prompt deliveries to customers and retail locations, which boosts satisfaction and increases profitability. The mobile application converts devices into scanning tools and GPS navigators, allowing for pick validation and improved operational efficiency, while the desktop version provides role-based security and advanced management features. Regular manual and event-driven cycle counts help maintain precise inventory levels. Additionally, integration with ProShip allows for the quick identification of the most economical shipping carriers directly within the platform.

Odoo is a highly customizable and open-source software solution that features a wide array of professionally crafted business applications. With its user-friendly database, Odoo addresses various business requirements, encompassing areas such as CRM, Sales, Projects, Manufacturing, Inventory, and Accounting. This versatile software is suitable for businesses of all sizes and budgets, making it an ideal choice for diverse company needs. The cohesive design of Odoo enhances operational efficiency and helps businesses save valuable time. Each module is designed to work harmoniously, providing a fluid experience as users navigate from one application to another. Automation capabilities allow users to streamline numerous tasks that would typically require manual entry across various systems. Odoo fosters collaboration among team members by consolidating all critical business functions onto a single platform, which ultimately enhances productivity and organization within the company. Furthermore, its adaptability ensures that businesses can continually evolve and tailor the system to their changing requirements.

MindCloud serves as a contemporary iPaaS and offers a comprehensive service solution tailored for small to medium-sized enterprises, allowing you to manage projects without the need for dedicated technical personnel. With an extensive library of over 50 pre-built connectors, we can also incorporate any new software platform equipped with an API or supports automated data imports and exports. In addition, we facilitate EDI and FTP integrations to enhance connectivity. Notable connectors include Salesforce, Monday.com, Hubspot, QuickBooks Desktop, QuickBooks Online, Method:CRM, Zapier, Walmart, Amazon, Overstock, eBay, Groupon, Mercado Libre, HSN, Airtable, Google Sheets, and a wide array of others. MindCloud empowers you to automate all your business processes effectively, thereby eradicating the need for redundant data entry. By integrating your business operations, you can streamline your workflow and improve your overall productivity, making your life easier in the process.

Streamline the intricacies of stock deliveries, raw material inventory, order fulfillment, and more with WinMan ERP’s user-friendly Warehouse Management features. Tailored specifically for distribution activities, our software serves as an additional support layer, automating alerts, overseeing inventory levels, and ensuring effective management of your stock. With precise tracking of goods and materials, efficient management of distribution logistics, and enhanced shipping processes, you can redirect your efforts towards the core activities that propel your business forward. The system also facilitates informed decision-making, whether that involves reorganizing storage spaces or aligning inventory with customer needs. Moreover, WinMan ERP allows for integration with essential third-party applications, providing you with a well-rounded and flexible solution for streamlined warehouse operations.

Digit is a cloud-based software solution designed to assist businesses in monitoring their operations in real-time. It encompasses various functionalities for purchasing, receiving, inventory management, production, sales, and fulfillment. The primary objective of Digit is to unify disparate systems into a comprehensive operating system that enables organizations to plan, execute, measure, optimize, and connect their processes effectively. With features that allow users to create purchase orders, manage serialized inventories, ensure quality control, handle material billing and routings, oversee sales order management, and facilitate guided picking and packaging, Digit streamlines numerous operational aspects. Additionally, it seamlessly integrates with QuickBooks, enhancing its utility for financial management. This innovative software provides a holistic approach, empowering businesses to enhance their efficiency and productivity.

The Katana Cloud Inventory platform offers an integrated view of your business, featuring real-time inventory and manufacturing oversight, batch tracking for comprehensive traceability, a dedicated Shop Floor App for complete control at the manufacturing level, an open API for seamless integrations, and an expanding network of channel partners. With real-time inventory insights, you can access current data to make well-informed decisions, effectively avoiding issues like stockouts and overstocking. This ensures you maintain full visibility of product locations, arrivals, and quantities, which is crucial for operational efficiency and accurate stock management. The platform also includes built-in purchase order management, allowing businesses to make data-driven purchasing choices based on specific material needs and reorder thresholds. Users can generate purchase orders directly through Katana and monitor potential delays to fulfill customer demands promptly. In terms of manufacturing operations management, you can establish your bill of materials and processes to enhance production scheduling, balance raw material and finished goods levels, and keep a close eye on manufacturing costs for a more efficient production workflow. Moreover, the omnichannel sales management feature consolidates all your B2B and B2C sales orders, enabling quick identification of available items for sale, thereby significantly streamlining your order fulfillment process and enhancing overall operational effectiveness. This comprehensive approach not only drives efficiency but also supports sustainable growth in your business.

SAP S/4HANA Public Cloud serves as an advanced ERP solution that facilitates rapid digital transformation through AI-driven insights, adherence to industry standards, and an intuitive user experience. By enhancing operational efficiency, empowering decision-making, and revealing new avenues for growth, it stands out as a comprehensive tool for modern businesses. Key features include compliance with SOX and GAAP, robust financial controls, detailed forecasting and reporting, and effective treasury and tax management. Additionally, it offers automation through AI, machine learning, and robotic process automation, alongside efficient supply chain and inventory management solutions. With templated integrations and strong manufacturing capabilities, it supports scalability for businesses of all sizes. Embracing industry innovation is essential to propel growth in revenue, efficiency, and profitability. Continuous improvement is the cornerstone of optimizing business operations and processes, ensuring that organizations stay competitive in their respective markets. Therefore, selecting a dedicated partner who is committed to your success is crucial in navigating this journey.

CartonCloud offers an intuitive transport management system (TMS) and warehouse management system (WMS) that aims to simplify the complexities of logistics. This innovative software solution reimagines how companies operate, enhancing efficiency and productivity in their workflows. Gone are the days of wasting time searching for jobs or managing cumbersome paperwork. With CartonCloud, you can rest assured that your products are secure and your inventory remains under control, allowing you to handle increases in demand without turning away potential business. As an integrated system, CartonCloud provides all the essential tools needed for your business to thrive. With its user-friendly interface and comprehensive features, CartonCloud empowers organizations to optimize their logistics operations effectively.

Unmatched Business and Industry Functionality: Elevate your organization with reliable data gathering, comprehensive financial analysis, and accurate forecasting abilities. Acumatica Cloud ERP acts as a unified data hub, consolidating information from all departments into a single view. This ensures that every business process is systematically organized, allowing authorized personnel to access the same, up-to-date information anytime and anywhere, using any internet-connected device. Acumatica is uniquely tailored to meet the dynamic and specific demands of expanding midmarket businesses, empowering its users to prioritize their customers' success across all facets of their operations. The platform is designed to be adaptable, delivering value while offering the flexibility, efficiency, and remote collaboration features that contemporary enterprises require. Experience automation that simplifies processes, compliance that adapts to your needs, and a pathway for continuous improvement that maintains predictability in outcomes. This approach ensures that your business stays ahead of the competition in a rapidly changing market landscape.

SwiftCount is an innovative cloud-based solution designed for efficient inventory management. It boasts a variety of features, such as inventory counting, product administration, support for multiple locations, and advanced inventory searching capabilities. With SwiftCount, users can effortlessly manage and track a product database that remains synchronized across various devices. The platform also includes Swift Scan, which enables users to scan UPCs and easily build their product database. This versatile system can function independently or be seamlessly integrated with accounting software, allowing for comprehensive tracking of inventory transactions, including shipping, receiving, and counting, as well as generating labels. The platform is fully compatible with both web and mobile devices, making it user-friendly and accessible at a reasonable price. When integrated with third-party platforms like Shopify or QuickBooks Online, SwiftCount equips businesses with essential tools for effective inventory management. Its flexibility caters to a diverse range of businesses, from small startups to large enterprises, ensuring that all users can benefit from its robust functionalities.

PULPO WMS is a cloud-based warehouse management software that facilitates rapid and effective optimization of warehouse operations. This powerful system is equipped with both an Android application and a web interface. Designed with warehouse staff in mind, the application promotes ease of use, fostering a paperless environment while significantly reducing errors with only minimal training needed. Its innovative configuration wizard streamlines the organization of zones and storage locations within the warehouse layout, allowing for quick adjustments. The software boosts employee productivity through features such as multi-order picking, efficient routing, and automated rules for positioning and staff assignments. Additionally, its robust open API makes integration with accounting or ERP systems like Quickbooks, Microsoft Dynamics, and SAP remarkably straightforward. By integrating with eCommerce platforms like Shopify, Magento, and Plentymarkets, PULPO WMS offers numerous benefits, including enhanced inventory accuracy, faster return processing, and quicker customer deliveries. Furthermore, the software provides advanced features for managing products based on lot numbers and expiration dates, ensuring optimal inventory control and compliance with regulatory standards. This comprehensive suite of tools enables warehouses to operate more effectively and respond swiftly to market demands.

DeliverySuite – Revolutionizing the Courier, Transportation, and Warehousing Sectors DeliverySuite offers an innovative toolkit tailored specifically for the needs of Couriers, Transportation, and Warehousing professionals. Our mission is to streamline your logistics processes and transform the way you operate and excel in these vibrant sectors. Picture having a dependable ally by your side to help you maneuver through the intricacies of contemporary logistics. It's akin to having a loyal companion who merges novel perspectives with actionable strategies, empowering your business not only to adapt but to flourish in this constantly evolving environment. With DeliverySuite, the focus extends beyond merely striving for greatness; it emphasizes establishing a robust groundwork for your logistics endeavors, ensuring your long-term success in the industry.

Introducing Kentro – an innovative ERP solution designed specifically for the modern E-Commerce landscape. Unlike traditional and often unwieldy systems such as NetSuite or SAP, Kentro provides a user-friendly, powerful platform at a significantly lower price point. Effortlessly manage everything from real-time inventory and multi-channel orders to supply chain logistics and automated accounting. Kentro integrates seamlessly with over 100 external applications and more than 5000 automated workflows, which streamlines operations and minimizes the need for manual intervention. Our comprehensive suite features an adaptable online store, automated drop-ship capabilities, product catalog management, and a sophisticated rules engine for optimizing workflows. Additionally, with a dedicated vendor dashboard and robust API integration, Kentro stands out as the most effective and accessible ERP solution for E-Commerce businesses navigating today's digital marketplace. Furthermore, the platform's constant updates ensure that businesses can adapt to the ever-evolving market demands effortlessly.

A cloud-centric solution designed for the fulfillment of B2C e-commerce orders, featuring virtual Pick&Pack services, inventory oversight, and real-time tracking capabilities. Additionally, it offers delivery monitoring, seamless integration with various e-commerce platforms, comprehensive analytics and reporting, automation of logistics processes, and efficient management of multiple clients and warehouses in a 3PL environment, among other functionalities. This comprehensive suite aims to streamline operations and enhance the overall customer experience.

SkuVault has now joined the Linnworks brand family, providing two exceptional offerings: SkuVault Core and SkuVault Enhanced Warehouse. For those seeking complete accuracy in real-time inventory management, SkuVault is the answer. Our platform effectively addresses the challenges associated with inaccurate stock levels, ensuring your inventory is consistently synchronized with your sales channels. This eliminates the risk of stockouts and overselling while reducing errors through integrated quality control and scanning features. Furthermore, you can effortlessly manage everything through an incredibly user-friendly interface. The solutions offered by SkuVault not only boost efficiency but also enhance your profitability; clients typically experience a tenfold decrease in stockouts, a 30% reduction in labor expenses, and an impressive 87% cut in fulfillment time. Don't wait any longer—take the first step today to unlock the full potential of your inventory and transform your operations for the better!

Flowtrac offers both on-premise and cloud-based solutions that assist organizations in effectively managing their inventory, assets, warehouses, work in process, proofs of delivery, and various other unique needs. Its clientele spans commercial, governmental, educational, and humanitarian sectors, showcasing its versatility. Users can access the system through desktops, tablets, smartphones, and mobile barcode scanners, ensuring flexibility in operations. The Flowtrac team provides comprehensive guidance throughout the implementation process, including training, consulting, development, and ongoing support, with both online and on-site assistance available. Are you still relying on Excel for tracking purposes or using traditional pen and paper methods? With Flowtrac, barcode information can be scanned directly into the cloud database using barcode scanners, smartphones, or tablets, eliminating the hassle of importing or exporting data and the risks associated with losing or damaging spreadsheets. Furthermore, Flowtrac is compatible with RFID technology, supporting mobile, fixed-mount, doorway, and both indoor and outdoor readers, enabling a wide range of data collection methods. Whether you're online or offline, Flowtrac efficiently stores data locally on your device during offline periods and seamlessly updates the cloud once you reconnect, ensuring data integrity and accessibility. This adaptability makes Flowtrac an invaluable tool for modern inventory management.

Jolt Fulfillment System is a user-friendly cloud-based platform designed to assist with various functions such as managing products and inventory, integrating orders from multiple channels, generating packing slips and shipping labels, overseeing warehouse operations, customizing workflows, and facilitating EDI or API integration along with reporting capabilities. By utilizing Jolt, businesses can effortlessly expand their sales across different channels while efficiently managing warehouse processes. Additionally, all workflows within the system are tailored to meet the specific requirements of your business, ensuring a seamless operational experience.

Lead Commerce provides a swift deployment cloud-based solution for warehouse and inventory management tailored for a wide range of sectors, including medical, pharmaceuticals, military, manufacturing, automotive, and government contractors, accommodating businesses of any size from startups to large enterprises, featuring barcode, lot and serial tracking, kitting, assembly, and customizable reporting dashboards. This software ensures seamless integration with popular online sales platforms like Amazon, Etsy, eBay, Shopify, and BigCommerce. The diverse client base of Lead Commerce spans from small, one-person startups to major corporations, including industry leaders like Hitachi and LG, as well as various departments and contractors within the US Armed Forces. What sets Lead Commerce apart is its unparalleled benefits, such as complimentary 24/7/365 American phone support provided by dedicated account representatives who understand your unique requirements and the latest industry developments. Additionally, their pricing structure is more competitive because it is based on configurable options rather than custom solutions, eliminating the burden of contracts and annual fees. Overall, Lead Commerce combines advanced technology with exceptional customer service to deliver a comprehensive inventory management experience.

Cin7 is an online inventory management solution that enables companies to oversee their stock from any location and in real-time. This system is ideal for both wholesalers and retailers engaged in the sale of products across multiple channels. It combines various functionalities, including cloud inventory, point of sale, warehouse management, 3PL, and direct EDI, all within a single platform. Furthermore, Cin7 facilitates seamless integration with popular e-commerce platforms like Shopify, Magento, and Xero, as well as major marketplaces such as Amazon and eBay, enhancing operational efficiency for users. This comprehensive approach ensures that businesses can optimize their inventory processes while maintaining a competitive edge in the market.

Erply offers a robust, user-friendly cloud-based POS system that functions seamlessly across all devices. It can be utilized both online and offline, providing the flexibility that is essential for thriving businesses. With Erply's POS, your organization can reduce costs, streamline transaction processes, and enhance decision-making. The intuitive interface can be accessed via desktops, laptops, tablets, and smartphones, operating smoothly on Android, iOS, and Windows platforms. This innovative solution adapts traditional POS capabilities for mobile use, giving your enterprise a polished appearance without incurring high expenses. Furthermore, all transaction data is synchronized in real-time with your Erply account, guaranteeing that your reports and financial records maintain complete accuracy. By leveraging this technology, businesses can stay agile and responsive in a fast-paced market.