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What is Genome Analysis Toolkit (GATK)?

Developed by the Data Sciences Platform at the Broad Institute, this all-encompassing toolkit offers a broad spectrum of features that focus largely on variant discovery and genotyping. It boasts a powerful processing engine along with high-performance computing capabilities, making it suitable for handling projects of any size. The GATK is recognized as the gold standard for identifying SNPs and indels in germline DNA as well as RNA sequencing data. Its functionalities are expanding to include detection of somatic short variants, as well as tackling copy number variations (CNV) and structural variations (SV). In addition to the primary variant callers, the GATK features a variety of utilities designed for performing related tasks, such as processing and ensuring the quality of high-throughput sequencing data, and it is complemented by the renowned Picard toolkit. Initially tailored for exome and whole genome data produced by Illumina sequencing technologies, these tools exhibit enough flexibility to adapt to various other sequencing technologies and study designs. As the field of genomics continues to advance, the GATK's versatility guarantees its ongoing relevance in a wide range of genomic research projects, ensuring that it remains a pivotal resource for scientists exploring genetic variations.

What is Benchling?

Outdated R&D software can hinder scientific advancements by impeding progress and creating fragmented data repositories. Benchling stands out as the leading R&D cloud platform for the life sciences sector, providing all necessary tools to enhance, evaluate, and project R&D success from initial discovery to bioprocessing, all conveniently housed in a single location. It features a comprehensive suite of seven interrelated applications designed to propel R&D efforts at every stage. With capabilities for open integration, effortless configuration, and customized dashboards, it caters to diverse user needs. To maintain ongoing achievement, having profound expertise in life sciences R&D and consulting is crucial. Benchling not only consolidates R&D processes but also enables teams to concentrate on collaboration and progression rather than data retrieval. By ensuring complete transparency into experimental contexts, program efficiencies, and resource utilization, Benchling empowers scientists, managers, executives, and researchers to maximize their R&D potential. This holistic approach fosters a more productive research environment, ultimately driving innovation forward.

Media

Media

Integrations Supported

Calira
Docker
Invert
Pluto
Res_Q
Scispot
Tableau

Integrations Supported

Calira
Docker
Invert
Pluto
Res_Q
Scispot
Tableau

API Availability

Has API

API Availability

Has API

Pricing Information

Free
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

Broad Institute

Company Location

United States

Company Website

gatk.broadinstitute.org/hc/

Company Facts

Organization Name

Benchling

Date Founded

2012

Company Location

United States

Company Website

www.benchling.com

Categories and Features

Categories and Features

ELN

Lab Inventory Management

Barcode Scanning
Expiration Date Management
Purchasing
Reorder Management
Sample Management
Supply Management
Usage Tracking
Vendor Management

LIMS

Audit Trail
Certificates of Analysis
Data Import / Export
Electronic Laboratory Notebook
Inventory Management
Lab Instrument Interface
Reporting & Statistics
Sample Tracking
Specification Management
Workflow Management

Scientific Data Management System (SDMS)

Analytics
Artificial Intelligence (AI)
Audit
Centralized Data Repository
Collaboration
Compliance
Data Security
ELN Integration
LIMS Integration
Workflows

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