Ratings and Reviews 0 Ratings

Total
ease
features
design
support

This software has no reviews. Be the first to write a review.

Write a Review

Ratings and Reviews 0 Ratings

Total
ease
features
design
support

This software has no reviews. Be the first to write a review.

Write a Review

Alternatives to Consider

  • BrandMap® 10 Reviews & Ratings
    Company Website
  • 800.com Reviews & Ratings
    1,455 Ratings
    Company Website
  • Samsara Reviews & Ratings
    1,995 Ratings
    Company Website
  • Jama Connect Reviews & Ratings
    321 Ratings
    Company Website
  • Fishbowl Reviews & Ratings
    1,041 Ratings
    Company Website
  • Highcharts Reviews & Ratings
    111 Ratings
    Company Website
  • Ant Media Server Reviews & Ratings
    201 Ratings
    Company Website
  • JS7 JobScheduler Reviews & Ratings
    Company Website
  • TimeControl Reviews & Ratings
    1 Rating
    Company Website
  • Auth0 Reviews & Ratings
    860 Ratings
    Company Website

What is Loupe Browser?

Loupe Browser distinguishes itself as an effective visualization platform, equipped with intuitive features that are crucial for exploring and analyzing datasets from 10x Genomics Chromium and Visium. Furthermore, the LoupeR package streamlines the process of converting Seurat objects into formats that are compatible with Loupe Browser. The interactive capabilities of Loupe Browser are well-demonstrated through its application to a lung squamous cell carcinoma dataset. A key aspect of the user interface is the view panel, which displays individual points, each corresponding to a cell barcode, across various projections. Typically, each point represents the barcode of a single cell, facilitating detailed analysis. The default projection is a t-SNE plot generated by the cell ranger pipeline, but users also have access to other visualization options. They can easily drag the mouse over the cells to reposition the plot and utilize the mouse wheel or trackpad for zooming in or out. Additionally, when the mouse hovers over the plot, cluster labels appear, which is especially advantageous for analyzing datasets with many precomputed clusters. This feature significantly enriches the analytical process, allowing for easier identification and interpretation of intricate data patterns. With its user-centric design and functionality, Loupe Browser empowers researchers to gain deeper insights from their genomic data.

What is Illumina Connected Analytics?

Effectively manage, store, and collaborate on multi-omic datasets with ease. The Illumina Connected Analytics platform provides a secure environment for genomic data, enabling the operationalization of informatics and the extraction of valuable scientific insights. Users have the convenience of importing, creating, and modifying workflows using tools like CWL and Nextflow. The platform integrates DRAGEN bioinformatics pipelines, which enhance data processing capabilities. You can securely organize your data within a protected workspace that allows for global sharing while adhering to compliance standards. Retain your data on your own cloud infrastructure while taking advantage of our powerful platform. A versatile analysis environment, including JupyterLab Notebooks, is available for visualizing and interpreting your data effectively. With a scalable data warehouse, you can aggregate, query, and analyze both sample and population data, adapting to your growing needs. By constructing, validating, automating, and deploying informatics pipelines efficiently, you can significantly reduce the time required for genomic data analysis, which is crucial when rapid results are necessary. Additionally, the platform offers extensive profiling capabilities to discover novel drug targets and pinpoint biomarkers for drug response. Lastly, you can seamlessly integrate data from Illumina sequencing systems, ensuring a smooth and efficient workflow experience while optimizing your research outcomes. This comprehensive approach not only enhances productivity but also fosters collaboration among researchers.

Media

Media

Integrations Supported

Amazon S3
Docker
Illumina DRAGEN Secondary Analysis
JupyterLab
Nextflow

Integrations Supported

Amazon S3
Docker
Illumina DRAGEN Secondary Analysis
JupyterLab
Nextflow

API Availability

Has API

API Availability

Has API

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

10x Genomics

Date Founded

2012

Company Location

United States

Company Website

www.10xgenomics.com/support/software/loupe-browser/latest

Company Facts

Organization Name

Illumina

Company Location

United States

Company Website

www.illumina.com/products/by-type/informatics-products/connected-analytics.html

Categories and Features

Categories and Features

Popular Alternatives

Popular Alternatives

Parse Biosciences Evercode Reviews & Ratings

Parse Biosciences Evercode

Parse Biosciences
GenomeStudio Reviews & Ratings

GenomeStudio

Illumina
QIAGEN CLC Genomics Workbench Reviews & Ratings

QIAGEN CLC Genomics Workbench

QIAGEN Digital Insights
Evo Designer Reviews & Ratings

Evo Designer

Arc Institute