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What is NVIDIA Parabricks?

NVIDIA® Parabricks® is distinguished as the only comprehensive suite of genomic analysis tools that utilizes GPU acceleration to deliver swift and accurate genome and exome assessments for a variety of users, including sequencing facilities, clinical researchers, genomics scientists, and developers of high-throughput sequencing technologies. This cutting-edge platform incorporates GPU-optimized iterations of popular tools employed by computational biologists and bioinformaticians, resulting in significantly enhanced runtimes, improved scalability of workflows, and lower computing costs. Covering the full spectrum from FastQ files to Variant Call Format (VCF), NVIDIA Parabricks markedly elevates performance across a range of hardware configurations equipped with NVIDIA A100 Tensor Core GPUs. Genomics researchers can experience accelerated processing throughout their complete analysis workflows, encompassing critical steps like alignment, sorting, and variant calling. When users deploy additional GPUs, they can achieve near-linear scaling in computational speed relative to conventional CPU-only systems, with some reporting acceleration rates as high as 107X. This exceptional level of efficiency establishes NVIDIA Parabricks as a vital resource for all professionals engaged in genomic analysis, making it indispensable for advancing research and clinical applications alike. As genomic studies continue to evolve, the capabilities of NVIDIA Parabricks position it at the forefront of innovation in this rapidly advancing field.

What is Genome Analysis Toolkit (GATK)?

Developed by the Data Sciences Platform at the Broad Institute, this all-encompassing toolkit offers a broad spectrum of features that focus largely on variant discovery and genotyping. It boasts a powerful processing engine along with high-performance computing capabilities, making it suitable for handling projects of any size. The GATK is recognized as the gold standard for identifying SNPs and indels in germline DNA as well as RNA sequencing data. Its functionalities are expanding to include detection of somatic short variants, as well as tackling copy number variations (CNV) and structural variations (SV). In addition to the primary variant callers, the GATK features a variety of utilities designed for performing related tasks, such as processing and ensuring the quality of high-throughput sequencing data, and it is complemented by the renowned Picard toolkit. Initially tailored for exome and whole genome data produced by Illumina sequencing technologies, these tools exhibit enough flexibility to adapt to various other sequencing technologies and study designs. As the field of genomics continues to advance, the GATK's versatility guarantees its ongoing relevance in a wide range of genomic research projects, ensuring that it remains a pivotal resource for scientists exploring genetic variations.

Media

Media

Integrations Supported

Amazon Web Services (AWS)
Docker
Google Cloud Platform
Microsoft Azure
Oracle Cloud Infrastructure

Integrations Supported

Amazon Web Services (AWS)
Docker
Google Cloud Platform
Microsoft Azure
Oracle Cloud Infrastructure

API Availability

Has API

API Availability

Has API

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Pricing Information

Free
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

NVIDIA

Date Founded

1993

Company Location

United States

Company Website

www.nvidia.com/en-us/clara/genomics/

Company Facts

Organization Name

Broad Institute

Company Location

United States

Company Website

gatk.broadinstitute.org/hc/

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