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What is Nanome?

Nanome is an innovative platform that facilitates collaborative molecular visualization and enhances drug discovery efforts. Users can conveniently upload protein and small-molecule structures to analyze together in a three-dimensional view, which can be accessed via web browsers or various XR headsets, including the Meta Quest 3 and 3S, Apple Vision Pro, and Samsung Galaxy XR. In a collaborative session, participants, such as a chemist using a headset alongside a colleague on a laptop, can collectively focus on the same molecular aspects regardless of their physical locations. The platform is equipped with MARA, an AI copilot that adeptly handles tasks such as docking, co-folding, electrostatics calculations, and ADMET predictions by interpreting simple, natural language commands and utilizes more than 300 integrated scientific tools to generate 3D models for deeper analysis. Furthermore, Nanome accommodates a wide range of file formats including PDB, mmCIF, SDF, MOL2, PyMOL, and Maestro, and it connects seamlessly with various platforms like Schrodinger LiveDesign, OpenEye, Cresset Flare, CDD Vault, KNIME, and Jupyter. For enterprises, deployment options are available in single-tenant or on-premises configurations, which bolster security and governance. Users can access a free web seat, and there's a trial period of 14 days that does not require a credit card for initiation. By bridging the gap between technology and molecular science, Nanome is truly transforming the collaborative landscape for research teams.

What is NAMD?

NAMD stands as a high-performance parallel molecular dynamics software designed explicitly for simulating large biomolecular systems. It employs Charm++ parallel objects, enabling it to scale effectively from everyday personal computers to sophisticated parallel systems, handling hundreds of cores for typical simulations and even surpassing 500,000 cores for the most complex scenarios. This software is crafted for scientists focused on executing efficient simulations of extensive molecular systems while ensuring it integrates seamlessly with widely used molecular modeling workflows. NAMD works in conjunction with the renowned molecular graphics tool VMD, facilitating both the setup of simulations and the analysis of trajectories, while ensuring compatibility with file formats from AMBER, CHARMM, and X-PLOR. Additionally, it is meticulously designed to support biomolecular simulations involving proteins, membranes, nucleic acids, solvents, ions, and various other molecular entities, thereby allowing for a detailed investigation of atomic interactions and dynamic processes over time. Researchers can thus depend on NAMD for valuable insights into the complexities of molecular dynamics, ultimately enhancing their understanding of the underlying biological mechanisms at play.

Media

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Media

Integrations Supported

Additional information not provided

Integrations Supported

Additional information not provided

API Availability

API Availability

Pricing Information

$20.83/month/user (academic)
Free Version
Free Trial Offered?

Pricing Information

Free
Free Version

Supported Platforms

SaaS
Windows
On-Prem

Supported Platforms

Windows
Mac
Linux

Customer Service / Support

Web-Based Support

Customer Service / Support

Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training

Training Options

Documentation Hub

Company Facts

Organization Name

Nanome

Date Founded

2015

Company Location

United States

Company Website

nanome.ai

Company Facts

Organization Name

Theoretical and Computational Biophysics Group

Date Founded

2006

Company Location

United States

Company Website

www.ks.uiuc.edu/Research//namd/

Categories and Features

Drug Discovery

Not specified

Molecular Modeling

Not specified

Categories and Features

Molecular Modeling

Not specified

Particle Simulation

Not specified

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