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What is Partek Flow?

Partek bioinformatics software provides a comprehensive suite of statistical and visualization tools via an intuitive interface designed for researchers with varying levels of expertise. This innovative platform enables users to explore genomic data with remarkable speed and simplicity, effectively reflecting our slogan, "We turn data into discovery®." Featuring pre-configured workflows and pipelines in an easy-to-use point-and-click format, even intricate analyses of next-generation sequencing (NGS) and array data are made accessible to all researchers. Our unique blend of customized and publicly available statistical algorithms works seamlessly to convert NGS data into meaningful biological insights. The software’s engaging visual elements, such as genome browsers, Venn diagrams, and heat maps, reveal the complexities of next-generation sequencing and array data in striking detail. Furthermore, our dedicated team of Ph.D. scientists is always on hand to assist with any NGS analysis questions that may arise. Designed to accommodate the extensive computational demands of next-generation sequencing, the software also provides adaptable options for installation and user management, ensuring a well-rounded solution for diverse research objectives. Consequently, users can devote more of their time to advancing their research rather than grappling with technical obstacles, thereby enhancing productivity and discovery in their scientific endeavors.

What is Loupe Browser?

Loupe Browser distinguishes itself as an effective visualization platform, equipped with intuitive features that are crucial for exploring and analyzing datasets from 10x Genomics Chromium and Visium. Furthermore, the LoupeR package streamlines the process of converting Seurat objects into formats that are compatible with Loupe Browser. The interactive capabilities of Loupe Browser are well-demonstrated through its application to a lung squamous cell carcinoma dataset. A key aspect of the user interface is the view panel, which displays individual points, each corresponding to a cell barcode, across various projections. Typically, each point represents the barcode of a single cell, facilitating detailed analysis. The default projection is a t-SNE plot generated by the cell ranger pipeline, but users also have access to other visualization options. They can easily drag the mouse over the cells to reposition the plot and utilize the mouse wheel or trackpad for zooming in or out. Additionally, when the mouse hovers over the plot, cluster labels appear, which is especially advantageous for analyzing datasets with many precomputed clusters. This feature significantly enriches the analytical process, allowing for easier identification and interpretation of intricate data patterns. With its user-centric design and functionality, Loupe Browser empowers researchers to gain deeper insights from their genomic data.

Media

Media

Integrations Supported

Additional information not provided

Integrations Supported

Additional information not provided

API Availability

Has API

API Availability

Has API

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

Partek

Date Founded

2011

Company Location

United States

Company Website

www.partek.com

Company Facts

Organization Name

10x Genomics

Date Founded

2012

Company Location

United States

Company Website

www.10xgenomics.com/support/software/loupe-browser/latest

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