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What is PedigreePoint?

Employing PedigreePoint software allows you to upload your pedigree database to the internet, enabling others to search and view pedigrees along with various reports connected to specific entries. Typically, you manage your pedigree data using a desktop application, and after making necessary updates, you can publish these changes to the MySQL database that PedPoint uses, allowing visitors to your site to access the most current information. An example of how pedigrees are displayed is provided below, showcasing how PedPoint features images and utilizes what we call marks—solid color blocks in specific cells—to indicate attributes such as genetic defects. Designed for installation on a web server, PedigreePoint is built using PHP, which connects to a MySQL relational database usually hosted on the same server as the website. This integration enables users to effortlessly engage with the online database, retrieve detailed information, and make use of the visual representation of pedigree data. As a result, the software not only streamlines data management but also enhances accessibility for all interested parties.

What is Loupe Browser?

Loupe Browser distinguishes itself as an effective visualization platform, equipped with intuitive features that are crucial for exploring and analyzing datasets from 10x Genomics Chromium and Visium. Furthermore, the LoupeR package streamlines the process of converting Seurat objects into formats that are compatible with Loupe Browser. The interactive capabilities of Loupe Browser are well-demonstrated through its application to a lung squamous cell carcinoma dataset. A key aspect of the user interface is the view panel, which displays individual points, each corresponding to a cell barcode, across various projections. Typically, each point represents the barcode of a single cell, facilitating detailed analysis. The default projection is a t-SNE plot generated by the cell ranger pipeline, but users also have access to other visualization options. They can easily drag the mouse over the cells to reposition the plot and utilize the mouse wheel or trackpad for zooming in or out. Additionally, when the mouse hovers over the plot, cluster labels appear, which is especially advantageous for analyzing datasets with many precomputed clusters. This feature significantly enriches the analytical process, allowing for easier identification and interpretation of intricate data patterns. With its user-centric design and functionality, Loupe Browser empowers researchers to gain deeper insights from their genomic data.

Media

Media

Integrations Supported

MySQL

Integrations Supported

MySQL

API Availability

Has API

API Availability

Has API

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

PedigreePoint

Company Website

www.pedigreepoint.com

Company Facts

Organization Name

10x Genomics

Date Founded

2012

Company Location

United States

Company Website

www.10xgenomics.com/support/software/loupe-browser/latest

Categories and Features

Breeder

Cat Breeding
Dog Breeding
Goat Breeding
Horse Breeding
Plant Breeding
Rabbit Breeding

Categories and Features

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