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What is YASARA?

YASARA is a comprehensive software solution for molecular graphics, modeling, and simulation that has been available since 1993 and operates seamlessly across various platforms, including Windows, Linux, MacOS, and Android, aimed at making scientific inquiries more accessible. With an intuitive interface and impressive photorealistic graphics, it supports cost-effective virtual reality headsets, shutter glasses, and autostereoscopic displays, creating an engaging environment that allows users to focus on their research without the software becoming a distraction. Central to YASARA’s functionality is its Portable Vector Language (PVL), a cutting-edge development framework that offers performance levels significantly higher than traditional programs. This powerful framework enables users to visualize intricate protein structures and conduct authentic interactive simulations with accurate force fields on standard computers, while also taking advantage of GPU resources when available. By allowing users to actively manipulate molecules and interact with dynamic models rather than merely observing static representations, YASARA marks a pivotal enhancement in the realm of molecular modeling technology. This interactive capability not only enriches the educational process but also inspires users to delve deeper into the complexities of molecular interactions, ultimately broadening their understanding of scientific phenomena. As a result, YASARA fosters a more engaging and productive research experience for professionals and students alike.

What is LigPlot+?

LigPlot+ is the upgraded version of the original LIGPLOT software, tailored for the automatic generation of 2D illustrations that represent ligand-protein interactions. With its intuitive Java interface, users can easily modify plots by utilizing simple click-and-drag movements, which simplifies the editing process significantly. In addition to the enhanced interface, LigPlot+ boasts numerous important improvements over its earlier version. When examining multiple ligand-protein complexes that exhibit key similarities, the software can automatically generate interaction diagrams that can be displayed either overlapped or side by side, with conserved interactions highlighted for straightforward recognition. Furthermore, the LigPlot+ package includes an improved variant of the original DIMPLOT program, which specializes in visualizing interactions between proteins or domains. Users can select the specific interface of interest, allowing DIMPLOT to create an intricate diagram that maps out the residue-residue interactions within that chosen interface. For added clarity, residues from one interface can also be shown in sequential order, which enhances the usability and overall functionality of the tool. This thorough approach not only aids researchers in comprehending intricate molecular interactions more intuitively but also promotes a deeper understanding of the underlying biological processes at play. Overall, LigPlot+ stands out as an essential resource for scientists delving into the complexities of molecular interactions.

Media

Media

Integrations Supported

Python

Integrations Supported

Python

API Availability

Has API

API Availability

Has API

Pricing Information

Free
Free Trial Offered?
Free Version

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

YASARA

Date Founded

1993

Company Location

Austria

Company Website

www.yasara.org

Company Facts

Organization Name

EMBL-EBI

Company Location

United Kingdom

Company Website

www.ebi.ac.uk/thornton-srv/software/LigPlus/

Categories and Features

Categories and Features

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