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What is LigPlot+?

LigPlot+ is the upgraded version of the original LIGPLOT software, tailored for the automatic generation of 2D illustrations that represent ligand-protein interactions. With its intuitive Java interface, users can easily modify plots by utilizing simple click-and-drag movements, which simplifies the editing process significantly. In addition to the enhanced interface, LigPlot+ boasts numerous important improvements over its earlier version. When examining multiple ligand-protein complexes that exhibit key similarities, the software can automatically generate interaction diagrams that can be displayed either overlapped or side by side, with conserved interactions highlighted for straightforward recognition. Furthermore, the LigPlot+ package includes an improved variant of the original DIMPLOT program, which specializes in visualizing interactions between proteins or domains. Users can select the specific interface of interest, allowing DIMPLOT to create an intricate diagram that maps out the residue-residue interactions within that chosen interface. For added clarity, residues from one interface can also be shown in sequential order, which enhances the usability and overall functionality of the tool. This thorough approach not only aids researchers in comprehending intricate molecular interactions more intuitively but also promotes a deeper understanding of the underlying biological processes at play. Overall, LigPlot+ stands out as an essential resource for scientists delving into the complexities of molecular interactions.

What is Bokeh?

Bokeh streamlines the creation of standard visualizations while also catering to specific and unique needs. It provides users the ability to share plots, dashboards, and applications either on web platforms or directly within Jupyter notebooks. The Python ecosystem is rich with a variety of powerful analytical tools, such as NumPy, Scipy, Pandas, Dask, Scikit-Learn, and OpenCV, among many others. Featuring an extensive array of widgets, plotting options, and user interface events that activate real Python callbacks, the Bokeh server is essential for linking these tools to dynamic and interactive visualizations displayed in web browsers. Moreover, the Microscopium initiative, led by researchers at Monash University, harnesses Bokeh's interactive features to assist scientists in uncovering new functionalities of genes or drugs by allowing them to explore extensive image datasets. Another significant tool in this ecosystem is Panel, which focuses on producing polished data presentations and operates on the Bokeh server, enjoying support from Anaconda. Panel simplifies the process of building custom interactive web applications and dashboards by effortlessly connecting user-defined widgets to a variety of components, including plots, images, tables, or text. This seamless integration not only enhances the overall user experience but also cultivates an atmosphere that promotes effective data-driven decision-making and thorough exploration of complex datasets. Ultimately, the combination of these tools empowers users to engage with their data in innovative and meaningful ways.

Media

Media

Integrations Supported

Google Maps
JavaScript
Python

Integrations Supported

Google Maps
JavaScript
Python

API Availability

Has API

API Availability

Has API

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Pricing Information

Free
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

EMBL-EBI

Company Location

United Kingdom

Company Website

www.ebi.ac.uk/thornton-srv/software/LigPlus/

Company Facts

Organization Name

Bokeh

Company Website

bokeh.org

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