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What is PyMOL?

PyMOL is a molecular visualization software that operates as a user-supported open-source project, with its management and distribution handled by Schrödinger. The transition to the PyQt interface has replaced Tcl/Tk and MacPyMOL across all systems, which has greatly improved the overall user experience. This platform provides enhanced compatibility for third-party plugins and custom scripting, establishing it as a robust tool for visualizing and animating three-dimensional molecular structures. Additionally, a plug-in enables users to seamlessly integrate 3D images and animations into PowerPoint presentations, facilitating better communication of scientific concepts. While PyMOL is commercially licensed, a significant portion of its source code is available for free under a permissive license, supporting its open-source nature. This initiative is primarily funded by the sales of PyMOL licenses, with Schrödinger playing a key role in its sustainability. Users enjoy the advantages of open access to executables and a flexible evaluation system, allowing them to explore the software's capabilities thoroughly. Recent updates have introduced an improved fuse command that eliminates hypervalent bonds, substituting them with monovalent atoms, and a new properties inspector that allows settings to be unset using the “delete” key for greater user control. Moreover, the resolution issues that previously caused the workspace to disappear have been addressed, enhancing the overall user experience significantly. As a result, users can now work more effectively, enjoying a more polished and reliable interface.

What is Ascalaph Designer?

Ascalaph Designer is a multifunctional platform designed for executing molecular dynamic simulations. It combines various molecular dynamics approaches with classical and quantum mechanics techniques into a single graphical interface. Users can employ conjugate gradient methods to refine molecular geometries efficiently. The program presents molecular structures across separate windows, each featuring dual cameras that allow for simultaneous viewing from different perspectives and graphic formats. By manipulating the splitter found in the corners of each window, users can easily open additional subwindows. A simple click on an atom or bond with the left mouse button changes their color slightly, while a concise description of the selected element is displayed in the status bar. The wire-frame visualization proves particularly useful for visualizing larger molecules, like proteins, due to its speed and efficacy. Moreover, the CPK wire frame style integrates attributes from various earlier styles, thereby enriching the user experience. This adaptability positions Ascalaph Designer as an invaluable tool for researchers engaged in molecular dynamics studies, making it indispensable for those seeking to enhance their molecular analysis capabilities.

Media

Media

Integrations Supported

Laby
Microsoft PowerPoint
Python

Integrations Supported

API Availability

API Availability

Pricing Information

Pricing not provided
Free Version

Pricing Information

Free
Free Version

Supported Platforms

Windows
Mac
Linux

Supported Platforms

Windows

Customer Service / Support

Web-Based Support

Customer Service / Support

Web-Based Support

Training Options

Documentation Hub

Training Options

Documentation Hub

Company Facts

Organization Name

PyMOL

Company Location

Germany

Company Website

pymol.org/2/

Company Facts

Organization Name

Agile Molecule

Company Location

Sweden

Company Website

www.biomolecular-modeling.com/Ascalaph/Ascalaph_Designer.html

Categories and Features

Molecular Modeling

Not specified

Categories and Features

Molecular Modeling

Not specified

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NAMD Reviews & Ratings

NAMD

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Ascalaph Designer Reviews & Ratings

Ascalaph Designer

Agile Molecule
NAMD Reviews & Ratings

NAMD

Theoretical and Computational Biophysics Group