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What is Swiss-PdbViewer?

Swiss-PdbViewer, often referred to as DeepView, is a user-friendly software application designed for the concurrent analysis of multiple proteins. It allows users to align these proteins to assess structural similarities and inspect essential elements, including active sites. The software streamlines the acquisition of data regarding amino acid substitutions, hydrogen bonds, angles, and atomic distances via its straightforward graphical interface and menu options. Created by Nicolas Guex in 1994, Swiss-PdbViewer was initially designed to work closely with SWISS-MODEL, an automated homology modeling server established by the Swiss Institute of Bioinformatics (SIB) within the Structural Bioinformatics Group at the Biozentrum in Basel. As SWISS-MODEL's web interface has evolved over the years, enhancing its functionality for sophisticated modeling tasks, the need for a direct link to Swiss-PdbViewer has diminished, resulting in the cessation of its support. This shift illustrates the ongoing advancements in bioinformatics tools and the increasing complexity of their features. Consequently, users now enjoy a broader array of capabilities that reflect the rapidly changing landscape of protein modeling and analysis.

What is GROMACS?

GROMACS is a powerful open-source software suite designed for high-performance molecular dynamics and output analysis. This versatile tool can simulate the Newtonian equations of motion for systems comprising anywhere from hundreds to millions of particles, with a strong focus on materials modeling, biomolecular simulations, and particle-based systems. While GROMACS is primarily tailored for biochemical molecules such as proteins, lipids, and nucleic acids—which often possess intricate bonded interactions—its exceptional speed in handling nonbonded interactions makes it advantageous for exploring non-biological systems, like polymers. The software adeptly models particle ensembles in a variety of states, including liquid, solid, and gas, and supports a wide range of molecular dynamics workflows, spanning from basic energy minimization and equilibration to comprehensive production simulations and trajectory analyses. As GROMACS develops, it continually integrates new features and improvements that expand its utility across various scientific fields, thereby enhancing researchers' ability to conduct complex simulations. This adaptability ensures that GROMACS remains a valuable resource for scientists exploring both biological and material systems.

Media

Media

Integrations Supported

Additional information not provided

Integrations Supported

Additional information not provided

API Availability

Has API

API Availability

Has API

Pricing Information

Pricing not provided.
Free Trial Offered?
Free Version

Pricing Information

Free
Free Trial Offered?
Free Version

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Supported Platforms

SaaS
Android
iPhone
iPad
Windows
Mac
On-Prem
Chromebook
Linux

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Customer Service / Support

Standard Support
24 Hour Support
Web-Based Support

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Training Options

Documentation Hub
Webinars
Online Training
On-Site Training

Company Facts

Organization Name

Swiss-PdbViewer

Date Founded

1994

Company Location

Switzerland

Company Website

spdbv.unil.ch/

Company Facts

Organization Name

GROMACS

Company Location

United States

Company Website

www.gromacs.org

Categories and Features

Categories and Features

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