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What is Swiss-PdbViewer?

Swiss-PdbViewer, often referred to as DeepView, is a user-friendly software application designed for the concurrent analysis of multiple proteins. It allows users to align these proteins to assess structural similarities and inspect essential elements, including active sites. The software streamlines the acquisition of data regarding amino acid substitutions, hydrogen bonds, angles, and atomic distances via its straightforward graphical interface and menu options. Created by Nicolas Guex in 1994, Swiss-PdbViewer was initially designed to work closely with SWISS-MODEL, an automated homology modeling server established by the Swiss Institute of Bioinformatics (SIB) within the Structural Bioinformatics Group at the Biozentrum in Basel. As SWISS-MODEL's web interface has evolved over the years, enhancing its functionality for sophisticated modeling tasks, the need for a direct link to Swiss-PdbViewer has diminished, resulting in the cessation of its support. This shift illustrates the ongoing advancements in bioinformatics tools and the increasing complexity of their features. Consequently, users now enjoy a broader array of capabilities that reflect the rapidly changing landscape of protein modeling and analysis.

What is Nanome?

Nanome is an innovative platform that facilitates collaborative molecular visualization and enhances drug discovery efforts. Users can conveniently upload protein and small-molecule structures to analyze together in a three-dimensional view, which can be accessed via web browsers or various XR headsets, including the Meta Quest 3 and 3S, Apple Vision Pro, and Samsung Galaxy XR. In a collaborative session, participants, such as a chemist using a headset alongside a colleague on a laptop, can collectively focus on the same molecular aspects regardless of their physical locations. The platform is equipped with MARA, an AI copilot that adeptly handles tasks such as docking, co-folding, electrostatics calculations, and ADMET predictions by interpreting simple, natural language commands and utilizes more than 300 integrated scientific tools to generate 3D models for deeper analysis. Furthermore, Nanome accommodates a wide range of file formats including PDB, mmCIF, SDF, MOL2, PyMOL, and Maestro, and it connects seamlessly with various platforms like Schrodinger LiveDesign, OpenEye, Cresset Flare, CDD Vault, KNIME, and Jupyter. For enterprises, deployment options are available in single-tenant or on-premises configurations, which bolster security and governance. Users can access a free web seat, and there's a trial period of 14 days that does not require a credit card for initiation. By bridging the gap between technology and molecular science, Nanome is truly transforming the collaborative landscape for research teams.

Media

Media

No images available

Integrations Supported

Additional information not provided

Integrations Supported

Additional information not provided

API Availability

API Availability

Pricing Information

Pricing not provided

Pricing Information

$20.83/month/user (academic)
Free Version
Free Trial Offered?

Supported Platforms

Windows
Mac
Linux

Supported Platforms

SaaS
Windows
On-Prem

Customer Service / Support

Web-Based Support

Customer Service / Support

Web-Based Support

Training Options

Documentation Hub

Training Options

Documentation Hub
Webinars
Online Training

Company Facts

Organization Name

Swiss-PdbViewer

Date Founded

1994

Company Location

Switzerland

Company Website

spdbv.unil.ch/

Company Facts

Organization Name

Nanome

Date Founded

2015

Company Location

United States

Company Website

nanome.ai

Categories and Features

Bioinformatics

Not specified

Molecular Modeling

Not specified

Categories and Features

Drug Discovery

Not specified

Molecular Modeling

Not specified

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