List of the Top 25 Payroll Software for Nonprofit in 2025

BambooHR Payroll simplifies the payroll process, making payday a breeze. By integrating a unified data source with extensive reporting capabilities, complete tax filing services, and attentive customer support, BambooHR guarantees that employees receive their payments promptly and correctly. With payroll managed efficiently, HR teams can shift their focus from compliance concerns to prioritizing their workforce.

RemotePeople is a leading Employer of Record (EOR) platform, trusted by top global companies to manage their international workforce. With our solution, businesses can efficiently recruit, hire, pay, and manage employees and contractors across 150+ countries. Our platform is built on in-depth knowledge of international labor laws and payroll, ensuring a secure and compliant approach to global workforce management. We simplify the complexities of global expansion by offering a range of services that guarantee compliance with local regulations, enabling you to confidently scale your team across borders. RemotePeople Services: Employer of Record (EOR) Global Payroll & Benefits Contractor Management International Recruitment Background Checks

OrangeHRM delivers an exceptional HRIS experience, equipping you and your team with all the necessary tools to excel in your HR roles. From monitoring PTO to conducting performance evaluations, this comprehensive software allows for seamless management of your HR functions in a single platform. With a global reputation, OrangeHRM is the go-to HR management solutions provider for countless businesses around the globe. Accessible to everyone, whether you're part of a burgeoning startup or a large multinational corporation, our free and open-source HR software simplifies HR management with essential features including: - Employee Management - PTO/Leave Management - Reports & Analytics - Performance Management - HR Administration - Recruitment (ATS) - Time Tracking - Mobile App Understanding the challenges faced by HR professionals, OrangeHRM was designed with their needs in mind. By offering a robust HR software solution at no cost, our aim was to extend the advantages of HR technology to all. The principle of 'HR for All' has guided us since our inception, empowering HR teams worldwide to make a significant impact. You can choose to utilize the OrangeHRM Starter edition either in the cloud or by downloading it for self-hosting, giving you the flexibility to select the setup that best suits your organization. This commitment to user choice further emphasizes our dedication to supporting HR professionals in their critical roles.

Velocity Global makes it easier for companies to expand their workforce internationally by offering a user-friendly HR platform that covers payroll, compliance, and human resources support. Operating in over 185 countries, we provide solutions that help your organization manage international employees effectively and in accordance with local regulations. Our platform facilitates timely and precise payroll for global teams, minimizing the risk of errors through an efficient process. Our comprehensive pricing includes all necessary local taxes and contributions, simplifying compliance and financial forecasting. Our knowledgeable team handles statutory benefits such as pensions and social security, ensuring that employees are enrolled in the right programs according to their specific locations.

Streamline your payroll processes with Folks Payroll, specifically designed for Canadian enterprises. Automate essential tasks such as calculations, deductions, and government remittances to maintain compliance and minimize mistakes. Employee information, hours worked, and leave records integrate effortlessly into the payroll system, guaranteeing precision and effectiveness in every pay period. With features like direct deposit, digital pay stubs, and secure record management, employees receive their payments punctually and reliably. Folks HR transforms payroll into a hassle-free experience, allowing you to dedicate your attention to what truly matters—your team.

FreshBooks simplifies the invoicing and billing process for small enterprises. Renowned as a leading accounting and invoicing solution, FreshBooks caters to both self-employed individuals and small businesses alike. By streamlining invoicing and billing tasks, it enables companies to focus on their passions and core activities. Its extensive array of robust features encompasses expense tracking, time management, and payment processing capabilities. Moreover, the FreshBooks mobile application empowers users to manage their finances from any location, enhancing flexibility and productivity. This combination of features and convenience makes FreshBooks an invaluable asset for any small business.

Our cloud-based time tracking system simplifies payroll reporting by automatically filling in necessary details. Employees have the flexibility to clock in from various devices, including mobile phones and desktops, ensuring a convenient experience. The process of logging work hours is straightforward for staff, and supervisors can effortlessly access and export time data. Additionally, employees can utilize their web browsers or dedicated apps for iOS, Android, and Google to check in. The platform allows management to monitor who is currently on the clock, track their GPS locations, and set restrictions on where employees can log their hours. We provide easy Excel data exports and seamless integration with popular payroll software such as QuickBooks, ADP, Paychex, and SurePayroll. Enhanced functionalities are included in our time clock solution, featuring PTO Accrual Tracking, Punch Rounding, Job Codes, QR code scanning, Automatic Breaks, and Single Sign-On (SSO) capabilities, making it an all-in-one solution for workforce management. With these comprehensive tools, businesses can streamline their payroll processes and enhance overall productivity.

Xero's payroll solution, enhanced by its integration with Gusto, simplifies the payroll process for small enterprises. It automatically computes tax obligations, manages payroll tax submissions, and facilitates employee payments, all while ensuring adherence to federal, state, and local laws. Xero seamlessly connects to your financial accounts, allowing for real-time synchronization of payroll information, which aids in precise accounting. With functionalities such as next-day direct deposits and automated tax filings, Xero optimizes payroll management, helping you save valuable time and minimizing administrative overhead.

Elevate your productivity with Hubstaff! Hubstaff provides time-tracking applications compatible with desktop, web browsers, and mobile devices. Once you initiate time tracking for a specific task, Hubstaff seamlessly operates in the background, using minimal resources while you focus on your work. Switching between tasks or stopping the timer is a breeze and can be done in just a few clicks. Monitoring your team's performance can be daunting, but Hubstaff is packed with excellent features designed to help you assess their productivity effectively. To maximize Hubstaff's benefits, it's essential to establish clear expectations for your team. This tool allows you to analyze each member's average productivity over time, helping you spot areas for improvement or shifts in their performance. Essentially, the more consistently you utilize Hubstaff, the more insightful your results will become. Additionally, Hubstaff is available across multiple platforms, including Mac, Windows, Linux, iOS, and Android, ensuring you can track productivity wherever you are.

NolaPro is a robust ERP-level system that encompasses accounting, order tracking, inventory management, and payroll functionality, all developed for Linux and positioned as a cost-effective alternative to pricier competitors. Its adaptability allows it to be tailored and scaled according to the unique needs of any business, which distinguishes it from other accounting software. For those who prefer a less hands-on approach, a cloud version is available, while local downloads for Windows and Linux cater to users seeking enhanced control and security measures. The software includes features such as Fulfillment & Service Order Management, Accounts Payable and Receivable, Customer Relationship Management, General Ledger, Payroll, Timeclock, and a B2B Portal for secure invoicing and payments, with the added benefit of integration with various third-party applications or the option to request custom features. NolaPro also facilitates multi-currency transactions and provides a wealth of additional features, boasting over 150 standard reports to meet diverse business needs. Notably, industry experts from CNet, Entrepreneur Magazine, TechRepublic, and The Linux Journal concur that NolaPro delivers exceptional flexibility, a rich feature set, and competitive pricing, making it an invaluable tool for effectively managing business operations. This comprehensive solution ensures that businesses can streamline their processes while also benefiting from continuous updates and support.

Payroll Connected is the sole fully automated payroll processing solution available in Canada. You only need to input the hours worked by an employee, and the system will handle the entire payroll process for you. It automatically computes Employment Insurance (EI), Canada Pension Plan (CPP), Income Tax, and Statutory Holiday Pay in accordance with the labor standards specific to your province. Being an online platform, Payroll Connected allows you to manage your payroll from any device equipped with a web browser. With a starting price of just $12 per month for up to 25 employees and unlimited payroll runs, it offers both affordability and practicality. This makes Payroll Connected an ideal choice for businesses looking to streamline their payroll operations.

SARU TECH has developed an ideal Payroll Management System aimed at streamlining payroll processing with maximum efficiency. This system automates salary calculations, manages tax deductions, processes bonuses, and facilitates secure online payments, guaranteeing precision in payroll handling. Enhancing the employee experience, it includes a self-service portal that allows individuals to manage their payslips and tax documents while also integrating leave and attendance management features. Additionally, the system offers audit trails, promoting both transparency and accountability in financial dealings. Overall, SARU TECH's solution not only simplifies payroll tasks but also empowers employees with greater control over their financial information.

Having everything centralized is essential as opposed to relying on a singular solution. If you're feeling inundated by a myriad of systems and procedures related to employee management, you're not alone. The struggle with manual data entry, a mountain of payroll documents, and poor integration between systems can significantly hinder productivity and increase the likelihood of compliance errors. ADP Workforce Now presents a robust cloud-based HR management platform that enables you to manage all your HR requirements—ranging from payroll and workforce management to talent acquisition and benefits—while delivering insightful analytics across these areas. This platform ensures that payroll can be processed both quickly and accurately, while also granting employees convenient access to their personal information at any time and from any location. Renowned for its affordability and effectiveness, ADP Workforce Now® Payroll is engineered to streamline payroll and tax filing while helping you adhere to compliance standards, making it adaptable as your company grows. Discover the potential of ADP Workforce Now to transform your organization’s payroll processes into a seamless operation. With this cutting-edge solution, you'll boost overall efficiency and enhance employee satisfaction, ensuring your team is engaged and motivated.

Paycor offers a comprehensive HR software platform that revolutionizes the way organizations oversee their workforce. More than 29,000 clients rely on Paycor to enhance nearly all facets of human resource management. This versatile platform encompasses functions such as recruitment, onboarding, payroll processing, tax compliance, administration of HR benefits, reporting, analytics, talent development, and learning management, among others. By transforming the methods used for recruiting, onboarding, and nurturing talent, as well as for compensation and retention, Paycor significantly improves HR practices. Ultimately, Paycor enables leaders to rise above the minutiae of HR tasks, allowing them to focus on strategic initiatives.

isolved stands out as a highly reputable leader in HCM technology, delivering an exceptional blend of software solutions and services tailored for the modern-day People Heroes encompassing HR, payroll, and benefits experts. Our isolved People Cloud, a thoughtfully integrated platform, is designed to streamline the complete employee experience, enabling organizations to effectively engage, empower, and motivate their talent while allowing their People Heroes the freedom to surpass their objectives and advance in their professional journeys. In this way, isolved not only enhances productivity but also fosters a supportive environment for career development.

APS is dedicated to simplifying payroll and HR processes for mid-sized organizations. Our integrated solution is crafted to ease workforce management tasks, offering a seamless experience for clients and partners alike. We pride ourselves on delivering tailored service and support that helps our customers achieve their objectives. By streamlining payroll processing, automating HR workflows, and enhancing the employee lifecycle through a unified platform, we position ourselves as a vital partner for businesses. We are APS, committed to being your essential workforce ally. Mid-sized enterprises prefer APS for their workforce needs due to our unwavering commitment to enhancing the customer experience. This dedication has enabled us to sustain an impressive 98% customer satisfaction rate consistently. With APS, companies in the mid-market sector benefit from superior systems, exceptional support, and improved outcomes that drive success. Our ongoing focus on innovation ensures that we remain at the forefront of workforce management solutions.

Timesheets.com is an effective solution for monitoring time and expenses efficiently. With our user-friendly platform, you can easily manage billable hours, payroll, time off, expenses, and human resources documents. It is particularly well-suited for small to medium enterprises. Setting it up takes just a few minutes, and we provide unlimited support through phone, email, or chat. Experience the benefits of Timesheets.com by signing up for free today, and streamline your business operations effortlessly.

OnTheClock is a contemporary time tracking solution designed to assist business owners in maintaining compliance by monitoring employee work hours effectively. This cloud-based software simplifies the process by automatically recording and calculating the times employees clock in and out, generating precise time cards essential for payroll processing. By integrating OnTheClock with your payroll system, you can enhance the efficiency of your payroll operations. The platform allows for seamless sharing of time card information with your payroll provider or enables your accountant to access the time clock data through an email invitation, ensuring a streamlined workflow. Its user-friendly dashboard empowers administrators and business owners to oversee paid time off (PTO) management. Additionally, employees can submit requests for time off, which can then be approved or denied by the management. Furthermore, OnTheClock offers a variety of advanced features, including GPS tracking, scheduling capabilities, and tools for tracking job and product costs, making it a comprehensive solution for workforce management. With such a wide array of functionalities, OnTheClock not only simplifies time tracking but also enhances overall productivity within the business.

QuickBooks Online stands out as the leading accounting software globally. This platform streamlines the accounting process, making it the top choice for small businesses, as it allows for effortless tracking of receipts, income, transactions, and more. Users have the convenience of capturing photos of receipts to associate them with expenses, ensuring everything is well-organized. Our customer support team is always ready to assist with any inquiries regarding QuickBooks. To maintain operational efficiency, you can utilize your favorite applications, as QuickBooks Online is designed to work seamlessly on PCs, Macs, tablets, and smartphones. By clicking the link, you can access a 30-day free trial and enjoy a 50% discount for the first three months of service. Beyond basic accounting functions, QuickBooks offers tools to help you monitor your income and expenses effectively, making tax preparation less daunting. On average, customers report saving $3,534 annually, showcasing the software's financial advantages. Should you require further assistance, QuickBooks Live is available to help keep you organized and prepared for tax season. Additionally, QuickBooks Mobile provides the flexibility to manage your business operations from anywhere at any time, ensuring you’re always in control of your financials.

factoHR is a comprehensive, cloud-based HR payroll software in India designed to simplify HR operations and empower organizations to focus on what matters most—nurturing talent and driving success. Trusted by over 3,500 businesses and 2.6 million employees, including industry leaders like Wipro, Siemens, Tata Steel, GHCL, and Cycle Agarbatti, factoHR streamlines HR processes and enhances productivity. Our scalable platform offers a suite of integrated solutions, including HR & Payroll Management, Attendance and Leave Management, Performance Management, and Talent Acquisition, among others. By automating routine tasks, factoHR helps HR teams save time, reduce errors, and focus on strategic initiatives.

Netchex is a cloud-based Human Capital Management (HCM) system that enables organizations to effectively oversee their employee lifecycle. This comprehensive platform offers a variety of features, including tools for recruiting, hiring, onboarding, payroll processing, tax compliance, human resource management, time tracking, and benefits administration. Accessible from any internet-connected device, Netchex allows users to manage their workforce effortlessly and efficiently. With its advanced applicant tracking and onboarding capabilities, Netchex simplifies the hiring workflow for users. The recruiting module facilitates the identification and assessment of suitable candidates, enabling background checks, offer letter generation, CV archiving, and more. Additionally, Netchex provides flexible payment alternatives, detailed preprocessing reports, compliance oversight, and other essential functionalities, ensuring that payroll and tax operations are handled accurately and effectively. This makes Netchex not only a versatile tool but also a crucial partner in human resource management for businesses of all sizes.

Deel serves as a comprehensive global HR solution designed specifically for remote teams, streamlining the complexities of international hiring and payroll through features like automated onboarding, thorough compliance management, and seamless global payment integration, all developed with local insights. The platform's extensive legal network aids in reducing risks by offering customized contracts that align with regional labor regulations. By taking care of essential HR functions such as local benefits administration, payroll deductions, and payslip generation, Deel simplifies the process of hiring across borders. In addition to its robust functionalities for global contracts and payments, HR professionals have the option to connect Deel with their existing accounting and reporting tools, enhancing overall operational efficiency. Prioritizing security and compliance, Deel adheres to GDPR standards while allowing clients to oversee DPA agreements, intellectual property safeguards, and equipment usage conveniently through its user-friendly dashboard, ensuring a thorough and secure management experience. Ultimately, Deel empowers businesses to confidently navigate the international workforce landscape.

Zenefits is a cloud-based human resources platform that assists more than 11,000 small and medium enterprises in empowering their workforce, managing transitions, and ensuring compliance with regulations. The Zenefits People Platform stands out as one of the most user-friendly HR solutions available, featuring a comprehensive suite of HR, Benefits, and Payroll applications that work seamlessly together, along with advisory services and integrated partner apps, to streamline HR administration effectively. This integration allows businesses to concentrate on their core operations while minimizing administrative burdens. Furthermore, Zenefits enables HR teams to swiftly complete online forms to kickstart the onboarding of new hires, with automated processing of all employee details. Employees have the convenience of signing necessary agreements online, and HR personnel can efficiently manage employee transitions by easily removing individuals from benefits and payroll, while also setting up COBRA when needed. Additionally, the platform includes an employee self-service portal, enhancing accessibility and convenience for users. This comprehensive approach not only simplifies HR tasks but also fosters a more engaged workforce.

Sage Intacct stands out as a leading cloud-based financial management solution tailored for businesses on the rise. This software encompasses a wide array of functionalities, such as essential financial operations, accounts payable and receivable, cash flow management, and the ability to consolidate multiple entities. By automating vital financial tasks, it significantly boosts both efficiency and accuracy. Users can access real-time financial data through user-friendly and customizable dashboards, which aids in making informed, data-driven decisions. Moreover, Sage Intacct integrates effortlessly with a variety of business applications, providing a cohesive overview of operations and promoting data consistency and teamwork across different departments. Its advanced reporting and analytics features empower users to create comprehensive financial reports, monitor essential performance metrics, and derive valuable insights into their financial health. Scalable and dependable, Sage Intacct is trusted by numerous organizations globally. It adeptly manages complex organizational frameworks with its multi-entity management capabilities, ensuring smooth consolidations and inter-entity transactions. The cloud-based architecture guarantees ongoing updates and innovations, keeping financial management tools relevant. Additionally, with its award-winning customer service, Sage Intacct equips businesses to enhance their operational efficiency and financial clarity, ultimately driving growth and success.

Discover how a comprehensive time tracking tool, free from excessive oversight, can streamline your project management efforts. Your team can reach its full potential without the burden of micromanagement. Are you finding it challenging to monitor your team's performance across various projects? It's time to eliminate spreadsheets and uncertainties. With TimeCamp handling the time tracking, you can dedicate your attention to what truly matters. Explore the benefits of time tracking software in enhancing your team's productivity and ensuring your projects remain financially viable. TimeCamp empowers you to take charge of your own project management. Everything you need to know about your projects is conveniently located in a single platform. It's incredibly straightforward! TimeCamp automates data handling, allowing you to concentrate on the essential tasks that drive your success. By utilizing this tool, you not only simplify project management but also cultivate a more efficient workflow for your entire team.