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What is Loupe Browser?

Loupe Browser distinguishes itself as an effective visualization platform, equipped with intuitive features that are crucial for exploring and analyzing datasets from 10x Genomics Chromium and Visium. Furthermore, the LoupeR package streamlines the process of converting Seurat objects into formats that are compatible with Loupe Browser. The interactive capabilities of Loupe Browser are well-demonstrated through its application to a lung squamous cell carcinoma dataset. A key aspect of the user interface is the view panel, which displays individual points, each corresponding to a cell barcode, across various projections. Typically, each point represents the barcode of a single cell, facilitating detailed analysis. The default projection is a t-SNE plot generated by the cell ranger pipeline, but users also have access to other visualization options. They can easily drag the mouse over the cells to reposition the plot and utilize the mouse wheel or trackpad for zooming in or out. Additionally, when the mouse hovers over the plot, cluster labels appear, which is especially advantageous for analyzing datasets with many precomputed clusters. This feature significantly enriches the analytical process, allowing for easier identification and interpretation of intricate data patterns. With its user-centric design and functionality, Loupe Browser empowers researchers to gain deeper insights from their genomic data.

What is CellCount?

CellCount is a web-based application specifically created for the purpose of counting cells in laboratory environments that employ either hemocytometers or images from automated cell counters. This software efficiently analyzes images taken by microscope cameras or smartphones to locate the chamber grid and accurately quantify both viable and non-viable cells using the trypan blue exclusion technique. In cases where the grid recognition fails, users have the flexibility to manually mark the crossings for precise counting. The application delivers results that include cell viability percentages, corrected dilution cell concentrations per milliliter, and a histogram that illustrates cell size distributions. Users can observe the detected cells as they are outlined in the images and have the option to add or remove detections, modify classifications, and validate the final cell count. Furthermore, the application supports the sharing of protocols, enabling laboratories to preserve essential settings like dilution rates, selected squares, sensitivity thresholds, and parameters for cell sizes. By keeping detailed records of their samples, teams can export in-depth reports along with collections of images, and they have the ability to verify accepted records through a SHA-256 hash for added security. In conclusion, CellCount serves a diverse range of research and biotechnology laboratories that handle various cell types, such as cell lines, primary cells like PBMCs, and yeast, proving to be an indispensable tool for comprehensive cell analysis and management in scientific research.

Media

Media

No images available

Integrations Supported

Additional information not provided

Integrations Supported

Additional information not provided

API Availability

API Availability

Pricing Information

Pricing not provided

Pricing Information

$0
Free plan: 180 images per month, shared by up to 3 team members; no payment card or end date required. Counted images may be used to improve the service, including its models.
Free Version

Supported Platforms

Windows
Mac
Linux

Supported Platforms

SaaS

Customer Service / Support

Standard Support
Web-Based Support

Customer Service / Support

Not specified

Training Options

Documentation Hub
On-Site Training

Training Options

Not specified

Company Facts

Organization Name

10x Genomics

Date Founded

2012

Company Location

United States

Company Website

www.10xgenomics.com/support/software/loupe-browser/latest

Company Facts

Organization Name

Lowkey Vision AS

Date Founded

2026

Company Location

Norway

Company Website

cellcount.ai

Categories and Features

Bioinformatics

Not specified

Categories and Features

Lab Automation

Not specified

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