Ratings and Reviews 0 Ratings

Total
ease
features
design
support

This software has no reviews. Be the first to write a review.

Write a Review

Ratings and Reviews 0 Ratings

Total
ease
features
design
support

This software has no reviews. Be the first to write a review.

Write a Review

Alternatives to Consider

  • Jama Connect Reviews & Ratings
    416 Ratings
    Company Website
  • Epicor Connected Process Control Reviews & Ratings
    4 Ratings
    Company Website
  • CrankWheel Reviews & Ratings
    240 Ratings
    Company Website
  • JAMS Scheduler Reviews & Ratings
    285 Ratings
    Company Website
  • Highcharts Reviews & Ratings
    122 Ratings
    Company Website
  • Wave Browser Reviews & Ratings
    52 Ratings
    Company Website
  • Vibe Retail Reviews & Ratings
    93 Ratings
    Company Website
  • HERE Enterprise Browser Reviews & Ratings
    2 Ratings
    Company Website
  • MarkMagic Reviews & Ratings
    48 Ratings
    Company Website
  • JS7 JobScheduler Reviews & Ratings
    1 Rating
    Company Website

What is Loupe Browser?

Loupe Browser distinguishes itself as an effective visualization platform, equipped with intuitive features that are crucial for exploring and analyzing datasets from 10x Genomics Chromium and Visium. Furthermore, the LoupeR package streamlines the process of converting Seurat objects into formats that are compatible with Loupe Browser. The interactive capabilities of Loupe Browser are well-demonstrated through its application to a lung squamous cell carcinoma dataset. A key aspect of the user interface is the view panel, which displays individual points, each corresponding to a cell barcode, across various projections. Typically, each point represents the barcode of a single cell, facilitating detailed analysis. The default projection is a t-SNE plot generated by the cell ranger pipeline, but users also have access to other visualization options. They can easily drag the mouse over the cells to reposition the plot and utilize the mouse wheel or trackpad for zooming in or out. Additionally, when the mouse hovers over the plot, cluster labels appear, which is especially advantageous for analyzing datasets with many precomputed clusters. This feature significantly enriches the analytical process, allowing for easier identification and interpretation of intricate data patterns. With its user-centric design and functionality, Loupe Browser empowers researchers to gain deeper insights from their genomic data.

What is Galaxy?

Galaxy is an open-source, web-oriented platform tailored for managing data-rich research within the biomedical sector. New users are encouraged to start with the basic introductory resources or seek out the extensive help options available to them. Additionally, it is possible to establish a personal instance of Galaxy by following a comprehensive tutorial while choosing from a broad selection of tools provided in the tool shed. The current operational Galaxy instance benefits from the infrastructure offered by the Texas Advanced Computing Center. Moreover, further resources can be accessed through the Jetstream2 cloud, which is enabled by ACCESS and backed by the National Science Foundation. Researchers have the ability to quantify, visualize, and summarize discrepancies found in deep sequencing datasets while also constructing maximum-likelihood phylogenetic trees. The platform also facilitates phylogenomic and evolutionary tree construction with multiple sequences, enables the clustering of matching reads using the TN-93 method, and allows for the exclusion of sequences from a reference within a designated distance of a cluster. Additionally, researchers can perform maximum-likelihood estimations to determine gene essentiality scores, reinforcing Galaxy's status as an invaluable instrument for diverse genomic research applications. With its robust capabilities and user-friendly design, Galaxy continues to advance the frontiers of biomedical research.

Media

Media

Integrations Supported

Integrations Supported

Arch
CoinRoutes
Inn-Flow
Lybra Assistant

API Availability

API Availability

Has API

Pricing Information

Pricing not provided

Pricing Information

Free
Free Version

Supported Platforms

Windows
Mac
Linux

Supported Platforms

SaaS

Customer Service / Support

Standard Support
Web-Based Support

Customer Service / Support

Web-Based Support

Training Options

Documentation Hub
On-Site Training

Training Options

Documentation Hub

Company Facts

Organization Name

10x Genomics

Date Founded

2012

Company Location

United States

Company Website

www.10xgenomics.com/support/software/loupe-browser/latest

Company Facts

Organization Name

Galaxy

Company Location

United States

Company Website

usegalaxy.org

Categories and Features

Bioinformatics

Not specified

Categories and Features

Bioinformatics

Not specified

Popular Alternatives

OmnibusX Reviews & Ratings

OmnibusX

OmnibusX Company Limited

Popular Alternatives

Parse Biosciences Evercode Reviews & Ratings

Parse Biosciences Evercode

Parse Biosciences